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Comparative genomics reveals insights into avian genome evolution and adaptation
Indexado
WoS WOS:000346189600035
Scopus SCOPUS_ID:84917678595
DOI 10.1126/SCIENCE.1251385
Año 2014
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.

Revista



Revista ISSN
Science 0036-8075

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Disciplinas de Investigación



WOS
Multidisciplinary Sciences
Scopus
Multidisciplinary
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 Zhang, Guojie Mujer Univ Copenhagen - Dinamarca
BGI Shenzhen - China
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
China National Genebank - China
2 Li, Cai - BGI Shenzhen - China
Univ Copenhagen - Dinamarca
China National Genebank - China
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
3 Li, Qiye - BGI Shenzhen - China
Univ Copenhagen - Dinamarca
China National Genebank - China
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
4 Li, Bo - BGI Shenzhen - China
5 Larkin, Denis M. Hombre UNIV LONDON - Reino Unido
Royal Veterinary College University of London - Reino Unido
6 Lee, Chul Hombre Seoul Natl Univ - Corea del Sur
Seoul National University - Corea del Sur
7 Storz, Jay F. Hombre Univ Nebraska - Estados Unidos
School of Biological Sciences - Estados Unidos
8 Antunes, Agostinho Hombre Univ Porto - Portugal
University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
Universidade do Porto - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
9 Greenwold, Matthew J. Hombre UNIV S CAROLINA - Estados Unidos
University of South Carolina - Estados Unidos
10 Meredith, Robert W. Hombre Montclair State Univ - Estados Unidos
Montclair State University - Estados Unidos
11 Odeen, Anders Hombre UPPSALA UNIV - Suecia
Uppsala Universitet - Suecia
12 Cui, Jie - UNIV SYDNEY - Australia
Duke NUS Grad Med Sch - Singapur
Sydney Medical School - Australia
Duke-NUS Medical School Singapore - Singapur
Faculty of Medicine and Health - Australia
Duke-NUS Medical School - Singapur
13 Zhou, Qi - UNIV CALIF BERKELEY - Estados Unidos
14 Xu, Luohao - BGI Shenzhen - China
Wuhan Univ - China
China National Genebank - China
Wuhan University - China
15 Pan, Hailin - BGI Shenzhen - China
China National Genebank - China
16 Wang, Zongji - BGI Shenzhen - China
S China Univ Technol - China
China National Genebank - China
South China University of Technology - China
17 Jin, Lijun - BGI Shenzhen - China
China National Genebank - China
18 Zhang, Pei - BGI Shenzhen - China
China National Genebank - China
19 Hu, Haofu - BGI Shenzhen - China
China National Genebank - China
20 Yang, Wei - BGI Shenzhen - China
China National Genebank - China
21 Hu, Jiang - BGI Shenzhen - China
China National Genebank - China
22 Xiao, Jin - BGI Shenzhen - China
23 Yang, Zhikai - BGI Shenzhen - China
China National Genebank - China
24 Liu, Yang - BGI Shenzhen - China
China National Genebank - China
25 Xie, Qiaolin - BGI Shenzhen - China
China National Genebank - China
26 Yu, Hao - BGI Shenzhen - China
China National Genebank - China
27 Lian, Jinmin Hombre BGI Shenzhen - China
China National Genebank - China
28 Wen, Ping - BGI Shenzhen - China
China National Genebank - China
29 Zhang, Fang - BGI Shenzhen - China
China National Genebank - China
30 Li, Hui - BGI Shenzhen - China
31 Zeng, Yongli - BGI Shenzhen - China
China National Genebank - China
32 Xiong, Zijun - BGI Shenzhen - China
China National Genebank - China
33 Liu, Shiping - BGI Shenzhen - China
S China Univ Technol - China
China National Genebank - China
South China University of Technology - China
34 Zhou, Long Hombre BGI Shenzhen - China
China National Genebank - China
35 Huang, Zhiyong - BGI Shenzhen - China
36 An, Na - BGI Shenzhen - China
China National Genebank - China
37 Wang, Jie - BGI Shenzhen - China
Univ Chinese Acad Sci - China
38 Zheng, Qiumei - BGI Shenzhen - China
China National Genebank - China
39 Xiong, Yingqi - BGI Shenzhen - China
China National Genebank - China
40 Wang, Guangbiao - BGI Shenzhen - China
China National Genebank - China
41 Wang, Bo - BGI Shenzhen - China
42 Wang, Jingjing - BGI Shenzhen - China
China National Genebank - China
43 Fan, Yu - CASSACA - China
Kunming Inst Zool - China
Kunming Institute of Zoology Chinese Academy of Sciences - China
Institute of Zoology Chinese Academy of Sciences - China
44 Zhang, Guojie Mujer Univ Copenhagen - Dinamarca
BGI Shenzhen - China
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
China National Genebank - China
45 Alfaro-Nunez, Alonzo Hombre Univ Copenhagen - Dinamarca
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
46 Schubert, Mikkel Hombre Univ Copenhagen - Dinamarca
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
47 Orlando, Ludovic Hombre Univ Copenhagen - Dinamarca
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
48 Mourier, Tobias Hombre Univ Copenhagen - Dinamarca
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
49 Howard, Jason T. - Duke Univ - Estados Unidos
50 Ganapathy, Ganeshkumar - Duke Univ - Estados Unidos
Duke University Medical Center - Estados Unidos
51 Pfenning, Andreas Hombre Duke Univ - Estados Unidos
Duke University Medical Center - Estados Unidos
52 Whitney, Osceola Hombre Duke Univ - Estados Unidos
Duke University Medical Center - Estados Unidos
CASSACA - China
53 Rivas, Miriam V. Mujer Duke Univ - Estados Unidos
Duke University Medical Center - Estados Unidos
54 Hara, Erina Mujer Duke Univ - Estados Unidos
Duke University Medical Center - Estados Unidos
55 Smith, Julia Mujer Duke Univ - Estados Unidos
Duke University Medical Center - Estados Unidos
56 Farre, Marta Mujer UNIV LONDON - Reino Unido
Royal Veterinary College University of London - Reino Unido
57 Narayan, Jitendra - Aberystwyth Univ - Reino Unido
Institute of Biological, Environmental and Rural Sciences - Reino Unido
58 Slavov, Gancho Hombre Aberystwyth Univ - Reino Unido
Institute of Biological, Environmental and Rural Sciences - Reino Unido
59 Romanov, Michael N. Hombre Univ Kent - Reino Unido
University of Kent - Reino Unido
60 Borges, Rui - Univ Porto - Portugal
University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
Universidade do Porto - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
61 Machado, Joao Paulo - Univ Porto - Portugal
University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
Universidade do Porto - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
62 Khan, Imran Hombre Univ Porto - Portugal
University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
Universidade do Porto - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
63 Springer, Mark S. Hombre Univ Calif Riverside - Estados Unidos
University of California, Riverside - Estados Unidos
64 Gatesy, John Hombre Univ Calif Riverside - Estados Unidos
University of California, Riverside - Estados Unidos
65 Hoffmann, Federico G. Hombre Mississippi State Univ - Estados Unidos
Mississippi State University - Estados Unidos
College of Agriculture and Life Sciences - Estados Unidos
66 OPAZO-CARVALLO, JUAN CRISTOBAL Hombre Universidad Austral de Chile - Chile
67 Hastad, Olle Hombre Swedish Univ Agr Sci - Suecia
Sveriges lantbruksuniversitet - Suecia
68 Sawyer, Roger H. Hombre UNIV S CAROLINA - Estados Unidos
University of South Carolina - Estados Unidos
69 Kim, Heebal - Seoul Natl Univ - Corea del Sur
Seoul National University - Corea del Sur
Research Institute of Agricultural and Life Science - Corea del Sur
70 Kim, Kyu-Won - Seoul Natl Univ - Corea del Sur
70 Kim, Kyu Won - Seoul National University - Corea del Sur
70 Kim, Kyu-Won - Seoul Natl Univ - Corea del Sur
Seoul National University - Corea del Sur
71 Kim, Hyeon Jeong - Seoul Natl Univ - Corea del Sur
Seoul National University - Corea del Sur
72 Cho, Seoae - Seoul Natl Univ - Corea del Sur
Seoul National University - Corea del Sur
73 Li, Ning - China Agr Univ - China
China Agricultural University - China
74 Huang, Yinhua - China Agr Univ - China
China Agricultural University - China
75 Bruford, Michael W. Hombre Cardiff Univ - Reino Unido
Cardiff University - Reino Unido
College of Biomedical and Life Sciences - Reino Unido
76 Zhan, Xiangjiang - Cardiff Univ - Reino Unido
CASSACA - China
Cardiff University - Reino Unido
Institute of Zoology Chinese Academy of Sciences - China
College of Biomedical and Life Sciences - Reino Unido
77 Dixon, Andrew Hombre Int Wildlife Consultants - Reino Unido
International Wildlife Consultants - Reino Unido
78 Bertelsen, Mads F. Hombre Copenhagen Zoo - Dinamarca
79 Derryberry, Elizabeth Mujer TULANE UNIV - Estados Unidos
Louisiana State Univ - Estados Unidos
Tulane University - Estados Unidos
Louisiana State University - Estados Unidos
80 Warren, Wesley Hombre WASHINGTON UNIV - Estados Unidos
Washington University in St. Louis - Estados Unidos
Washington University School of Medicine in St. Louis - Estados Unidos
81 Wilson, Richard K. - WASHINGTON UNIV - Estados Unidos
82 Li, Shengbin - Xi An Jiao Tong Univ - China
Xi'an Jiaotong University - China
83 Ray, David A. Hombre Mississippi State Univ - Estados Unidos
Mississippi State University - Estados Unidos
Texas Tech University - Estados Unidos
84 Green, Richard E. Hombre Univ Calif Santa Cruz - Estados Unidos
University of California, Santa Cruz - Estados Unidos
85 O'Brien, Stephen J. - St Petersburg State Univ - Rusia
Nova SE Univ - Estados Unidos
86 Griffin, Darren Hombre Univ Kent - Reino Unido
University of Kent - Reino Unido
87 Johnson, Warren E. Hombre Natl Zool Pk - Estados Unidos
National Zoological Park - Estados Unidos
Conservation and Research Center (National Zoo) - Estados Unidos
88 Haussler, David - Univ Calif Santa Cruz - Estados Unidos
89 Ryder, Oliver Hombre San Diego Zoo Inst Conservat Res - Estados Unidos
San Diego Zoo Institute for Conservation Research - Estados Unidos
San Diego Zoo Wildlife Alliance - Estados Unidos
90 Willerslev, Eske - Univ Copenhagen - Dinamarca
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
91 Graves, Gary R. Hombre Smithsonian Inst - Estados Unidos
Univ Copenhagen - Dinamarca
Smithsonian National Museum of Natural History - Estados Unidos
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
92 Alstroem, Per - CASSACA - China
Swedish Univ Agr Sci - Suecia
Institute of Zoology Chinese Academy of Sciences - China
Sveriges lantbruksuniversitet - Suecia
92 Alström, Per - Institute of Zoology Chinese Academy of Sciences - China
Sveriges lantbruksuniversitet - Suecia
93 Fjeldsa, Jon - Univ Copenhagen - Dinamarca
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
94 Mindell, David P. Hombre UNIV CALIF SAN FRANCISCO - Estados Unidos
University of California, San Francisco - Estados Unidos
95 Edwards, Scott V. Hombre Harvard University - Estados Unidos
96 Braun, Edward L. - UNIV FLORIDA - Estados Unidos
97 Rahbek, Carsten Hombre Univ Copenhagen - Dinamarca
Imperial Coll London - Reino Unido
Københavns Universitet - Dinamarca
Imperial College London - Reino Unido
Statens Naturhistoriske Museum - Dinamarca
98 Burt, David W. Hombre UNIV EDINBURGH - Reino Unido
University of Edinburgh, Roslin Institute - Reino Unido
99 Houde, Peter Hombre New Mexico State Univ - Estados Unidos
New Mexico State University Las Cruces - Estados Unidos
New Mexico State University - Estados Unidos
100 Zhang, Yong - BGI Shenzhen - China
101 Yang, Huanming - BGI Shenzhen - China
Macau Univ Sci & Technol - China
China National Genebank - China
Macau University of Science and Technology - Macao
102 Wang, Jian - BGI Shenzhen - China
103 Jarvis, Erich D. - Duke Univ - Estados Unidos
104 Gilbert, M. Thomas P. - Univ Copenhagen - Dinamarca
Curtin Univ - Australia
105 Wang, Jun - BGI Shenzhen - China
Macau Univ Sci & Technol - China
Univ Copenhagen - Dinamarca
King Abdulaziz Univ - Arabia Saudí
Univ Hong Kong - China
106 Avian Genome Consortium Corporación
106 Ye, Chen - China National Genebank - China
107 Liang, Shaoguang - China National Genebank - China
108 Yan, Zengli - China National Genebank - China
109 Zepeda, M. Lisandra - Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
110 Campos, Paula F. Mujer Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
111 Velazquez, Amhed Missael Vargas - Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
112 Samaniego, José Alfredo Hombre Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
113 Zhang, Guojie Mujer Univ Copenhagen - Dinamarca
BGI Shenzhen - China
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
China National Genebank - China
114 Martin, Michael D. Hombre Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
115 Zhang, Guojie Mujer Univ Copenhagen - Dinamarca
BGI Shenzhen - China
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
China National Genebank - China
116 Ribeiro, Angela M. Mujer University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
117 Mello, Claudio V. Hombre University of Portland - Estados Unidos
Oregon Health & Science University - Estados Unidos
118 Lovell, Peter V. Hombre University of Portland - Estados Unidos
Oregon Health & Science University - Estados Unidos
119 Almeida, Daniela Mujer Universidade do Porto - Portugal
University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
120 Maldonado, Emanuel Hombre University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
121 Pereira, Joana Mujer University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
122 Sunagar, Kartik - Universidade do Porto - Portugal
University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
123 Philip, Siby - Universidade do Porto - Portugal
University of Porto, Interdisciplinary Centre of Marine and Environmental Research - Portugal
CIIMAR - Interdisciplinary Centre of Marine and Environmental Research - Portugal
124 Dominguez-Bello, Maria Gloria Mujer University of Puerto Rico - Puerto Rico
Universidad de Puerto Rico - Puerto Rico
125 Bunce, Michael Hombre Curtin University - Australia
126 Lambert, David Hombre Griffith University - Australia
127 Brumfield, Robb T. Hombre Louisiana State University - Estados Unidos
Louisiana State Univ - Estados Unidos
128 Sheldon, Frederick H. Hombre Louisiana State University - Estados Unidos
129 Holmes, Edward C. Hombre Sydney Medical School - Australia
Faculty of Medicine and Health - Australia
130 Gardner, Paul P. Hombre University of Canterbury - Nueva Zelanda
131 Steeves, Tammy E. Mujer University of Canterbury - Nueva Zelanda
132 Stadler, Peter F. Hombre Universitát Leipzig - Alemania
133 Burge, Sarah W. Mujer European Bioinformatics Institute - Reino Unido
134 Lyons, Eric Hombre The University of Arizona - Estados Unidos
135 Smith, Jacqueline Mujer University of Edinburgh, Roslin Institute - Reino Unido
136 McCarthy, Fiona Mujer The University of Arizona - Estados Unidos
137 Pitel, Frederique Mujer INRAE Occitanie-Toulouse - Francia
INRAE Occitanie-Toulouse Centre - Francia
138 Rhoads, Douglas Hombre University of Arkansas - Fayetteville - Estados Unidos
University of Arkansas - Estados Unidos
139 Zhang, Guojie Mujer Univ Copenhagen - Dinamarca
BGI Shenzhen - China
Københavns Universitet - Dinamarca
Statens Naturhistoriske Museum - Dinamarca
China National Genebank - China
139 Froman, David P. Hombre Oregon State University - Estados Unidos

Muestra la afiliación y género (detectado) para los co-autores de la publicación.

Origen de Citas Identificadas



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Citas identificadas: Las citas provienen de documentos incluidos en la base de datos de DATACIENCIA

Citas Identificadas: 0.95 %
Citas No-identificadas: 99.05 %

Muestra la distribución de instituciones nacionales o extranjeras cuyos autores citan a la publicación consultada.

Citas identificadas: Las citas provienen de documentos incluidos en la base de datos de DATACIENCIA

Citas Identificadas: 0.95 %
Citas No-identificadas: 99.05 %

Financiamiento



Fuente
National Science Foundation
NIH
National Institutes of Health
Biotechnology and Biological Sciences Research Council
National Heart, Lung, and Blood Institute
Howard Hughes Medical Institute
Danish National Research Foundation
BBSRC
VILLUM FONDEN
NIH Office of the Director
Danish Council for Independent Research
Lundbeck Foundation
Marie Curie International Incoming Fellowship
BGI
Division Of Environmental Biology; Direct For Biological Sciences
Division Of Environmental Biology; Direct For Biological Sciences
Div Of Molecular and Cellular Bioscience; Direct For Biological Sciences

Muestra la fuente de financiamiento declarada en la publicación.

Agradecimientos



Agradecimiento
Genome assemblies and annotations of avian genomes in this study are available on the avian phylogenomics website (http://phybirds.genomics.org.cn), GigaDB (http://dx.doi.org/10.5524/101000), National Center for Biotechnology Information (NCBI), and ENSEMBL (NCBI and Ensembl accession numbers are provided in table S2). The majority of this study was supported by an internal funding from BGI. In addition, G.Z. was supported by a Marie Curie International Incoming Fellowship grant (300837); M.T.P.G. was supported by a Danish National Research Foundation grant (DNRF94) and a Lundbeck Foundation grant (R52-A5062); C.L. and Q.L. were partially supported by a Danish Council for Independent Research Grant (10-081390); and E.D.J. was supported by the Howard Hughes Medical Institute and NIH Directors Pioneer Award DP1OD000448.

Muestra la fuente de financiamiento declarada en la publicación.