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| DOI | 10.1016/J.MEDIA.2017.02.009 | ||||
| Año | 2017 | ||||
| Tipo | artículo de investigación |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
The segmentation of cell nuclei is an important step towards the automated analysis of histological images. The presence of a large number of nuclei in whole-slide images necessitates methods that are computationally tractable in addition to being effective. In this work, a method is developed for the robust segmentation of cell nuclei in histological images based on the principles of persistent homology. More specifically, an abstract simplicial homology approach for image segmentation is established. Essentially, the approach deals with the persistence of disconnected sets in the image, thus identifying salient regions that express patterns of persistence, By introducing an image representation based on topological features, the task of segmentation is less dependent on variations of color or texture. This results in a novel approach that generalizes well and provides stable performance. The method conceptualizes regions of interest (cell nuclei) pertinent to their topological features in a successful manner. The time cost of the proposed approach is lower-bounded by an almost linear behavior and upper-bounded by O(n(2)) in a worst-case scenario. Time complexity matches a quasilinear behavior which is O(n(1+epsilon)) for epsilon < 1. Images acquired from histological sections of liver tissue are used as a case study to demonstrate the effectiveness of the approach. The histological landscape consists of hepatocytes and non-parenchymal cells. The accuracy of the proposed methodology is verified against an automated workflow created by the output of a conventional filter bank (validated by experts) and the supervised training of a random forest classifier. The results are obtained on a per-object basis. The proposed workflow successfully detected both hepatocyte and non-parenchymal cell nuclei with an accuracy of 84.6%, and hepatocyte cell nuclei only with an accuracy of 86.2%. A public histological dataset with supplied ground-truth data is also used for evaluating the performance of the proposed approach (accuracy: 94.5%). Further validations are carried out with a publicly available dataset and ground-truth data from the Gland Segmentation in Colon Histology Images Challenge (GIaS) contest. The proposed method is useful for obtaining unsupervised robust initial segmentations that can be further integrated in image/data processing and management pipelines. The development of a fully automated system supporting a human expert provides tangible benefits in the context of clinical decision-making. (C) 2017 Elsevier B.V. All rights reserved.
| WOS |
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| Computer Science, Interdisciplinary Applications |
| Radiology, Nuclear Medicine & Medical Imaging |
| Computer Science, Artificial Intelligence |
| Engineering, Biomedical |
| Scopus |
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| Radiology, Nuclear Medicine And Imaging |
| Computer Vision And Pattern Recognition |
| Computer Graphics And Computer Aided Design |
| Radiological And Ultrasound Technology |
| Health Informatics |
| SciELO |
|---|
| Sin Disciplinas |
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | Rojas-Moraleda, Rodrigo | Hombre |
German Canc Res Ctr - Alemania
Universidad Técnica Federico Santa María - Chile German Cancer Research Center - Alemania |
| 2 | Xiong, Wei | - |
Heidelberg Univ - Alemania
Universität Heidelberg - Alemania Institut fur Theoretische Physik Heidelberg - Alemania |
| 3 | Halama, Niels | Hombre |
Univ Heidelberg Hosp - Alemania
Universitätsklinikum Heidelberg - Alemania German Cancer Research Center - Alemania |
| 4 | Breitkopf-Heinlein, Katja | Mujer |
Heidelberg Univ - Alemania
Universität Heidelberg - Alemania |
| 5 | Dooley, Steven | Hombre |
Heidelberg Univ - Alemania
Universität Heidelberg - Alemania |
| 6 | SALINAS-CARRASCO, LUIS ARMANDO | Hombre |
Universidad Técnica Federico Santa María - Chile
|
| 7 | Heermann, Dieter W. | Hombre |
Heidelberg Univ - Alemania
Universität Heidelberg - Alemania Institut fur Theoretische Physik Heidelberg - Alemania |
| 8 | Valous, Nektarios A. | Hombre |
German Canc Res Ctr - Alemania
German Cancer Research Center - Alemania |
| Fuente |
|---|
| FONDECYT |
| China Scholarship Council |
| Fondo Nacional de Desarrollo Científico y Tecnológico |
| German Federal Ministry of Education and Research |
| China Scholarship Council (CSC) |
| Bundesministerium für Bildung und Forschung |
| Fondo Nacional de Desarrollo CientÃfico, Tecnológico y de Innovación Tecnológica |
| Basal Project |
| AnilloProject |
| Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences (HGS MathComp) |
| German Federal Ministry of Education and Research: Virtual Liver Network grants |
| Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, University of Heidelberg |
| Human Genome Sciences |
| Agradecimiento |
|---|
| The authors are thankful to Ms. Katarina Abramovic for the technical assistance (immunohistochemistry). Experimental methods are supported by the German Federal Ministry of Education and Research: Virtual Liver Network grants 0315755 and 0315764 (SD). Dr. Luis Salinas acknowledges support from FONDECYT 1100805, Basal Project FB0821 CCTVal, and AnilloProject ACT119. Ms. Wei Xiong acknowledges the funding from the China Scholarship Council (CSC No. 2011604036) and support from the Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences (HGS MathComp). |
| The authors are thankful to Ms. Katarina Abramovic for the technical assistance (immunohistochemistry). Experimental methods are supported by the German Federal Ministry of Education and Research: Virtual Liver Network grants 0315755 and 0315764 (SD). Dr. Luis Salinas acknowledges support from FONDECYT 1100805, Basal Project FB0821 CCTVal, and AnilloProject ACT119. Ms. Wei Xiong acknowledges the funding from the China Scholarship Council (CSC No. 2011604036) and support from the Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences (HGS MathComp). |