Muestra métricas de impacto externas asociadas a la publicación. Para mayor detalle:
| Indexado |
|
||||
| DOI | 10.1094/PHYTO-04-17-0137-R | ||||
| Año | 2017 | ||||
| Tipo | artículo de investigación |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
Quantitative phenotyping of downy mildew sporulation is frequently used in plant breeding and genetic studies, as well as in studies focused on pathogen biology such as chemical efficacy trials. In these scenarios, phenotyping a large number of genotypes or treatments can be advantageous but is often limited by time and cost. We present a novel computational pipeline dedicated to estimating the percent area of downy mildew sporulation from images of inoculated grapevine leaf discs in a manner that is time and cost efficient. The pipeline was tested on images from leaf disc assay experiments involving two F-1 grapevine families, one that had glabrous leaves (Vitis rupestris B38 x 'Horizon' [RH]) and another that had leaf trichomes (Horizon x V. cinerea B9 [HC]). Correlations between computer vision and manual visual ratings reached 0.89 in the RH family and 0.43 in the HC family. Additionally, we were able to use the computer vision system prior to sporulation to measure the percent leaf trichome area. We estimate that an experienced rater scoring sporulation would spend at least 90% less time using the computer vision system compared with the manual visual method. This will allow more treatments to be phenotyped in order to better understand the genetic architecture of downy mildew resistance and of leaf trichome density. We anticipate that this computer vision system will find applications in other pathosystems or traits where responses can be imaged with sufficient contrast from the background.
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | Divilov, Konstantin | Hombre |
CORNELL UNIV - Estados Unidos
Cornell University - Estados Unidos |
| 2 | Wiesner-Hanks, Tyr | - |
CORNELL UNIV - Estados Unidos
Cornell University - Estados Unidos |
| 3 | BARBA-BURGOS, PAOLA LEONOR | Mujer |
CORNELL UNIV - Estados Unidos
Cornell University - Estados Unidos Instituto de Investigaciones Agropecuarias - Chile |
| 4 | Cadle-Davidson, Lance | Hombre |
USDA ARS - Estados Unidos
United States Department of Agriculture - Estados Unidos |
| 5 | REISCH, BRUCE, I | Hombre |
CORNELL UNIV - Estados Unidos
Instituto de Investigaciones Agropecuarias - Chile Cornell University - Estados Unidos |
| Fuente |
|---|
| U.S. Department of Agriculture |
| Michael Nolan Endowment Fund |
| Lake Erie Regional Grape Processor's Fund |
| New York Wine & Grape Foundation |
| Charles R. Bullis Plant Hybridization Endowment |
| Federal Capacity Funds |
| United States Department of Agriculture-National Institute for Food and Agriculture Specialty Crop Research Initiative |
| National Institute for Food and Agriculture Specialty Crop Research Initiative |
| Agradecimiento |
|---|
| We thank T. Palleja Cabre for showing us the efficacy of using the blue layer for detection of disease symptoms; K. Wenzel for providing the source code for the Wallis filter; M. Colizzi and S. Luce for vineyard maintenance; M. Colizzi, C. Herbert, A. Green, H. Kasinathan, C. Kumkey, H. Martens, A. Repka, M. Schaub, and M. J. Welser for help in collecting leaves and plating leaf discs; D. Gadoury, M. Schaub, and W. Wilcox for supplying leaves for propagation of the P. viticola isolate; and M. Gore for constructive feedback on the manuscript. This research was supported by the United States Department of Agriculture-National Institute for Food and Agriculture Specialty Crop Research Initiative (award number 2011-51181-30635), The New York Wine & Grape Foundation, Federal Capacity Funds, and the Lake Erie Regional Grape Processor's Fund. Graduate Assistantship support for K. Divilov was provided by the Charles R. Bullis Plant Hybridization Endowment and the Michael Nolan Endowment Fund. |
| We thank T. Pallejà Cabré for showing us the efficacy of using the blue layer for detection of disease symptoms; K. Wenzel for providing the source code for the Wallis filter; M. Colizzi and S. Luce for vineyard maintenance; M. Colizzi, C. Herbert, A. Green, H. Kasinathan, C. Kumkey, H. Martens, A. Repka, M. Schaub, and M. J. Welser for help in collecting leaves and plating leaf discs; D. Gadoury, M. Schaub, and W. Wilcox for supplying leaves for propagation of the P. viticola isolate; and M. Gore for constructive feedback on the manuscript. This research was supported by the United States Department of Agriculture–National Institute for Food and Agriculture Specialty Crop Research Initiative (award number 2011-51181-30635), The New York Wine & Grape Foundation, Federal Capacity Funds, and the Lake Erie Regional Grape Processor’s Fund. Graduate Assistantship support for K. Divilov was provided by the Charles R. Bullis Plant Hybridization Endowment and the Michael Nolan Endowment Fund. |