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| DOI | 10.1016/J.BIOSYSTEMS.2025.105519 | ||
| Año | 2025 | ||
| Tipo |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
Noncoding RNAs (ncRNAs) play a crucial role in the fine-tuning regulation of cells in all domains of life. In archaea, ncRNAs remain poorly studied, with only a few ncRNA classes well characterised. Archaea are renowned for their ability to survive in harsh environments, though they have been discovered in a variety of other habitats as well. We have determined the ncRNA candidate repertoire across 270 archaeal genomes using secondary structure inferences and sequence similarity searches. Here, 33 non-coding RNA classes were identified in these genomes. The correlation between all ncRNA classes and optimal growth temperature (OGT) was R2 0.65. Phylogenetic analysis based on multiple alignments of a set of highly conserved proteins revealed preferences for ncRNA classes at the phylum and genus levels. All of the ncRNA data generated by this study reveals a correlation between the genomic abundance of specific ncRNA classes and the optimal growth temperature, especially for the sRNA C/D box type. All the genomic and ncRNA archaeal data generated is a valuable resource that will stimulate experimentalists to investigate whether or not their predicted ncRNAs are correct and biologically meaningful, boosting further associative studies using the unique features of this domain.
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | Arias-Carrasco, Raúl | - |
Universidad Tecnológica Metropolitana - Chile
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| 2 | Aliaga-Tobar, Victor | - |
Universidad Mayor - Chile
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| 3 | ABADES-TORRES, SEBASTIAN RUY | Hombre |
Universidad Mayor - Chile
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| 4 | Maracaja-Coutinho, Vinicius | Hombre |
Universidad de Chile - Chile
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| Fuente |
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| Universidad Mayor |
| Fondo Nacional de Desarrollo Científico y Tecnológico |
| Comisión Nacional de Investigación Científica y Tecnológica |
| Agencia Nacional de Investigación y Desarrollo |
| Agradecimiento |
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| This work was supported by grants from Agencia Nacional de Investigaci\u00F3n y Desarrollo (ANID) [FONDECYT 11161020; PAI-CONICYT PAI79170021; ANID/STIC-AmSud STIC2020008 to V.M.C. and FONDECYT 1170995 to S.A.]. R.A.C and V.A.T. received Ph.D. fellowships from Vicerrector\u00EDa de Investigaci\u00F3n, Universidad Mayor, Chile. |