Hexagonal boron nitride exhibits two types of defects with great potential for quantum information technologies: single-photon emitters (SPEs) and one-dimensional grain boundaries hosting topologically-protected phonons, termed as topologically-protected phonon lines (TPL). Here, by means of a simple effective model and density functional theory calculations, we show that it is possible to use these phonons for the transmission of information. Particularly, a single SPE can be used to induce single-, two- and qubit-phonon states in the one-dimensional channel, and (ii) two distant SPEs can be coupled by the TPL that acts as a waveguide, thus exhibiting strong quantum correlations. We highlight the possibilities offered by this material-built-in nano-architecture as a phononic device for quantum information technologies.