Muestra métricas de impacto externas asociadas a la publicación. Para mayor detalle:
| Indexado |
|
||||
| DOI | 10.1093/PLCELL/KOAE038 | ||||
| Año | 2024 | ||||
| Tipo | revisión |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
A plant's response to external and internal nitrogen signals/status relies on sensing and signaling mechanisms that operate across spatial and temporal dimensions. From a comprehensive systems biology perspective, this involves integrating nitrogen responses in different cell types and over long distances to ensure organ coordination in real time and yield practical applications. In this prospective review, we focus on novel aspects of nitrogen (N) sensing/signaling uncovered using temporal and spatial systems biology approaches, largely in the model Arabidopsis. The temporal aspects span: transcriptional responses to N-dose mediated by Michaelis-Menten kinetics, the role of the master NLP7 transcription factor as a nitrate sensor, its nitrate-dependent TF nuclear retention, its "hit-and-run" mode of target gene regulation, and temporal transcriptional cascade identified by "network walking." Spatial aspects of N-sensing/signaling have been uncovered in cell type-specific studies in roots and in root-to-shoot communication. We explore new approaches using single-cell sequencing data, trajectory inference, and pseudotime analysis as well as machine learning and artificial intelligence approaches. Finally, unveiling the mechanisms underlying the spatial dynamics of nitrogen sensing/signaling networks across species from model to crop could pave the way for translational studies to improve nitrogen-use efficiency in crops. Such outcomes could potentially reduce the detrimental effects of excessive fertilizer usage on groundwater pollution and greenhouse gas emissions.
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | Shanks, Carly | Mujer |
NYU - Estados Unidos
New York University - Estados Unidos |
| 2 | ROTHKEGEL-AGURTO, KARIN | Mujer |
Núcleo Milenio en Biología Sintética y Biología de Sistemas Vegetales - Chile
Pontificia Universidad Católica de Chile - Chile Millennium Institute for Integrative Biology (iBio) - Chile Instituto Milenio de Biología Integrativa - Chile |
| 3 | Brooks, Matthew D. | - |
USDA ARS - Estados Unidos
USDA Agricultural Research Service - Estados Unidos |
| 4 | Cheng, Chia-Yi | - |
Natl Taiwan Univ - Taiwán
National Taiwan University - Taiwán |
| 5 | ALVAREZ-HERRERA, JOSE MIGUEL | Hombre |
Universidad Nacional Andrés Bello - Chile
Millennium Institute for Integrative Biology (iBio) - Chile Instituto Milenio de Biología Integrativa - Chile Facultad de Ciencias de la Vida - Chile |
| 6 | Ruffel, Sandrine | Mujer |
Univ Montpellier - Francia
Université de Montpellier - Francia |
| 7 | Krouk, Gabriel | Hombre |
Univ Montpellier - Francia
Université de Montpellier - Francia |
| 8 | GUTIERREZ-ILABACA, RODRIGO ANTONIO | Hombre |
Núcleo Milenio en Biología Sintética y Biología de Sistemas Vegetales - Chile
Pontificia Universidad Católica de Chile - Chile Millennium Institute for Integrative Biology (iBio) - Chile Instituto Milenio de Biología Integrativa - Chile |
| 9 | Coruzzi, Gloria M. | Mujer |
NYU - Estados Unidos
New York University - Estados Unidos |
| Fuente |
|---|
| FONDECYT |
| NIH |
| Fondo Nacional de Desarrollo Científico y Tecnológico |
| National Institutes of Health |
| Agence Nationale de la Recherche |
| Center for Genome Regulation |
| National Institute of General Medical Sciences |
| Ministry of Science and Technology, Taiwan |
| Université de Montpellier |
| Zegar Family Foundation |
| NIH NIGMS Fellowship |
| ANID Fondecyt |
| NSF-PGRP |
| ANID-Fondecyt |
| ANID-FONDECYT POSTDOCTORADO |
| ANID-Millennium Science Initiative Program-Millennium Institute for Integrative Biology |
| Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement |
| ANID-Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio) |
| Metaprogram DIGIT-BIO from INRAE |
| ANR (the French National Research Agency), under the "Investissements d'avenir" |
| ANR Plan de Relance TravelPep |
| MUSE University of Montpellier research grant |
| MOST research grant (NSTC) |
| Agradecimiento |
|---|
| This work was supported by the NSF-PGRP IOS-1840761 grant to GC and JMA, the Zegar Family Foundation (A16-0051) grant to GC, the NIH RO1-GM121753 grant to GC, the NIH NIGMS Fellowship F32GM139299 to CS, the ANID-FONDECYT Postdoctorado 3220033 to KR, and the MOST research grant (NSTC 112-2313-B-002-018-MY3) to CYC. RG's research is supported by ANID-Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio) (ICN17_022), the Center for Genome Regulation (ICN2021_044), and the FONDECYT 1180759. JMA's research is supported by the ANID-Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio), the ANID FONDECYT 1210389. SR research is supported by the Metaprogram DIGIT-BIO from INRAE and the ANR Plan de Relance TravelPep. GK's research is supported by MUSE University of Montpellier research grant (AI3P: Artificial Intelligence to Predict Phenotypes in Plants), the ANR (the French National Research Agency), under the "Investissements d'avenir" program with the reference ANR-16-IDEX-0006. |
| This work was supported by the NSF-PGRP IOS-1840761 grant to GC and JMA, the Zegar Family Foundation (A16-0051) grant to GC, the NIH RO1-GM121753 grant to GC, the NIH NIGMS Fellowship F32GM139299 to CS, the ANID-FONDECYT Postdoctorado 3220033 to KR, and the MOST research grant (NSTC 112-2313-B-002-018-MY3) to CYC. RG\u2019s research is supported by ANID-Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio) (ICN17_022), the Center for Genome Regulation (ICN2021_044), and the FONDECYT 1180759. JMA\u2019s research is supported by the ANID-Millennium Science Initiative Program-Millennium Institute for Integrative Biology (iBio), the ANID FONDECYT 1210389. SR research is supported by the Metaprogram DIGIT-BIO from INRAE and the ANR Plan de Relance TravelPep. GK\u2019s research is supported by MUSE University of Montpellier research grant (AI3P: Artificial Intelligence to Predict Phenotypes in Plants), the ANR (the French National Research Agency), under the \u201CInvestissements d\u2019avenir\u201D program with the reference ANR-16-IDEX-0006. |