Cropland ecosystem functioning may be affected by human perturbations transmitted from adjacent ecosystems, such as freshwater systems. However, our limited knowledge of the ecological interactions within cropland-freshwater networks hinders projecting the consequences of anthropogenic pressures. We reviewed the information from freshwater and cropland communities in the Mediterranean zone of Chile and constructed an ecological metanetwork for characterizing the structure and projecting responses of this system facing environmental pressures. We performed a semi-qualitative analysis to identify the nodes that strongly influence other network components and (or) could significantly affect the transmission of effects within the system. Our analyses show that omnivore fish, amphibians, annual pollinated crops, and deciduous orchards are the most important groups. Although we expected that amphibious predators were the most important groups in transmitting perturbations between ecosystems, we also found groups of plants and pollinators performing this function. We stress that the fate of crop systems facing environmental disturbances should be assessed in a broader context rather than as an isolated system.