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Isolation and genomics of ten novel Shewanella species from mangrove wetland
Indexado
WoS WOS:001080479900015
Scopus SCOPUS_ID:85163274459
DOI 10.1099/IJSEM.0.005929
Año 2023
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



Mangrove bacteria largely compose the microbial community of the coastal ecosystem and are directly associated with nutrient cycling. In the present study, 12 Gram-negative and motile strains were isolated from a mangrove wetland in Zhangzhou, China. Pairwise comparisons (based on 16S rRNA gene sequences) and phylogenetic analysis indicated that these 12 strains belong to the genus Shewanella. The 16S rRNA gene sequence similarities among the 12 Shewanella strains and their related type strains ranged from 98.8 to 99.8 %, but they still could not be considered as known species. The digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) values between the 12 strains and their related type strains were below the cut-off values (ANI 95–96% and dDDH 70 %) for prokaryotic species delineation. The DNA G+C contents of the present study strains ranged from 44.4 to 53.8 %. The predominant menaquinone present in all strains was MK-7. The present study strains (except FJAT-53532T) also contained ubiquinones (Q-8 and Q-7). The polar lipid phosphatidylglycerol and fatty acid iso-C 15: 0 was noticed in all strains. Based on phenotypic, chemotaxonomic, phylogenetic and genomic comparisons, we propose that these 12 strains represent 10 novel species within the genus Shewanella, with the names Shewanella psychrotolerans sp. nov. (FJAT-53749T= GDMCC 1.2398T=KCTC 82649T), Shewanella zhangzhouensis sp. nov. (FJAT-52072T= MCCC 1K05363T=KCTC 82447T), Shewanella rhizosphaerae sp. nov. (FJAT-53764T= GDMCC 1.2349T=KCTC 82648T), Shewanella mesophila sp. nov. (FJAT-53870T= GDMCC 1.2346T= KCTC 82640T), Shewanella halotolerans sp. nov. (FJAT-53555T= GDMCC 1.2344T=KCTC 82645T), Shewanella aegiceratis sp. nov. (FJAT-53532T= GDMCC 1.2343T=KCTC 82644T), Shewanella alkalitolerans sp. nov. (FJAT-54031T= GDMCC 1.2347T=KCTC 82642T), Shewanella spartinae sp. nov. (FJAT-53681T= GDMCC 1.2345T=KCTC 82641T), Shewanella acanthi sp. nov. (FJAT-51860T= GDMCC 1.2342T=KCTC 82650T) and Shewanella mangrovisoli sp. nov. (FJAT-51754T= GDMCC 1.2341T= KCTC 82647T).Mangrove bacteria largely compose the microbial community of the coastal ecosystem and are directly associated with nutrient cycling. In the present study, 12 Gram-negative and motile strains were isolated from a mangrove wetland in Zhangzhou, China. Pairwise comparisons (based on 16S rRNA gene sequences) and phylogenetic analysis indicated that these 12 strains belong to the genus Shewanella. The 16S rRNA gene sequence similarities among the 12 Shewanella strains and their related type strains ranged from 98.8 to 99.8 %, but they still could not be considered as known species. The digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) values between the 12 strains and their related type strains were below the cut-off values (ANI 95–96% and dDDH 70 %) for prokaryotic species delineation. The DNA G+C contents of the present study strains ranged from 44.4 to 53.8 %. The predominant menaquinone present in all strains was MK-7. The present study strains (except FJAT-53532T) also contained ubiquinones (Q-8 and Q-7). The polar lipid phosphatidylglycerol and fatty acid iso-C 15: 0 was noticed in all strains. Based on phenotypic, chemotaxonomic, phylogenetic and genomic comparisons, we propose that these 12 strains represent 10 novel species within the genus Shewanella, with the names Shewanella psychrotolerans sp. nov. (FJAT-53749T= GDMCC 1.2398T=KCTC 82649T), Shewanella zhangzhouensis sp. nov. (FJAT-52072T= MCCC 1K05363T=KCTC 82447T), Shewanella rhizosphaerae sp. nov. (FJAT-53764T= GDMCC 1.2349T=KCTC 82648T), Shewanella mesophila sp. nov. (FJAT-53870T= GDMCC 1.2346T= KCTC 82640T), Shewanella halotolerans sp. nov. (FJAT-53555T= GDMCC 1.2344T=KCTC 82645T), Shewanella aegiceratis sp. nov. (FJAT-53532T= GDMCC 1.2343T=KCTC 82644T), Shewanella alkalitolerans sp. nov. (FJAT-54031T= GDMCC 1.2347T=KCTC 82642T), Shewanella spartinae sp. nov. (FJAT-53681T= GDMCC 1.2345T=KCTC 82641T), Shewanella acanthi sp. nov. (FJAT-51860T= GDMCC 1.2342T=KCTC 82650T) and Shewanella mangrovisoli sp. nov. (FJAT-51754T= GDMCC 1.2341T= KCTC 82647T).

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Disciplinas de Investigación



WOS
Microbiology
Scopus
Sin Disciplinas
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 Liu, Guo Hong - Fujian Academy of Agricultural Sciences - China
Fujian Acad Agr Sci - China
2 Shang, Yang - Fujian Agriculture and Forestry University - China
2 Yang, Shang - Fujian Agr & Forestry Univ - China
Fujian Agriculture and Forestry University - China
3 Rao, Manik Prabhu Narsing - Universidad Autónoma de Chile - Chile
4 Shuang, Han - Fujian Agriculture and Forestry University - China
4 Han, Shuang - Fujian Agr & Forestry Univ - China
Fujian Agriculture and Forestry University - China
5 Xie, Cheng Jie - Fujian Agriculture and Forestry University - China
Fujian Agr & Forestry Univ - China
6 Alwathnani, Hend A. - King Saud University - Arabia Saudí
King Saud Univ - Arabia Saudí
7 Herzberg, Martin Hombre Martin-Universität Halle-Wittenberg - Alemania
Martin-Luther-Universität Halle-Wittenberg - Alemania
Martin Luther Univ Halle Wittenberg - Alemania
8 Rensing, Christopher Hombre Fujian Agriculture and Forestry University - China
Fujian Agr & Forestry Univ - China
9 Gui Zhou, Shun - Fujian Agriculture and Forestry University - China
9 Zhou, Shun Gui - Fujian Agr & Forestry Univ - China
Fujian Agriculture and Forestry University - China

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Financiamiento



Fuente
National Natural Science Foundation of China
King Saud University
King Saud University, Riyadh, Saudi Arabia
Fujian Academy of Agricultural Sciences

Muestra la fuente de financiamiento declarada en la publicación.

Agradecimientos



Agradecimiento
This work was supported by grants from the National Natural Science Foundation of China (grants U21A20295 and 42007221), the Fujian Academy of Agricultural Sciences (grant GJYS202203), and Research Supporting Project number (RSP2023R205), King Saud University, Riyadh, Saudi Arabia.
This work was supported by grants from the National Natural Science Foundation of China (grants U21A20295 and 42007221) , the Fujian Academy of Agricultural Sciences (grant GJYS202203) , and Research Supporting Project number (RSP2023R205) , King Saud University, Riyadh, Saudi Arabia.

Muestra la fuente de financiamiento declarada en la publicación.