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The anti-SARS-CoV-2 activity of novel 9, 10-dihydrophenanthrene derivatives: an insight into molecular docking, ADMET analysis, and molecular dynamics simulation
Indexado
WoS WOS:001025149400001
DOI 10.1016/J.SCIAF.2023.E01754
Año 2023
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



Originating in Wuhan, the COVID-19 pandemic wave has had a profound impact on the global healthcare system. In this study, we used a 2D QSAR technique, ADMET analy-sis, molecular docking, and dynamic simulations to sort and evaluate the performance of thirty-nine bioactive analogues of 9,10-dihydrophenanthrene. The primary goal of the study is to use computational approaches to create a greater variety of structural refer-ences for the creation of more potent SARS-CoV-2 3Clpro inhibitors. This strategy is to speed up the process of finding active chemicals. Molecular descriptors were calculated using 'PaDEL' and 'ChemDes' software, and then redundant and non-significant descriptors were eliminated by a module in 'QSARINS ver. 2.2.2'. Subsequently, two statistically robust QSAR models were developed by applying multiple linear regression (MLR) methods. The correlation coefficients obtained by the two models are 0.89 and 0.82, respectively. These models were then subjected to internal and external validation tests, Y-randomization, and applicability domain analysis. The best model developed is applied to designate new molecules with good inhibitory activity values against severe acute respiratory syndrome coronavirus 2 (SARS CoV-2). We also examined various pharmacokinetic properties using ADMET analysis. Then, through molecular docking simulations, we used the crystal struc-ture of the main protease of SARS-CoV-2 (3CLpro/Mpro) in a complex with the covalent inhibitor "Narlaprevir" (PDB ID: 7JYC). We also supported our molecular docking predic-tions with an extended molecular dynamics simulation of a docked ligand-protein com-plex. We hope that the results obtained in this study can be used as good anti-SARS-CoV-2 inhibitors.& COPY; 2023 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license ( http://creativecommons.org/licenses/by-nc-nd/4.0/ )

Revista



Revista ISSN
2468-2276

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Disciplinas de Investigación



WOS
Multidisciplinary Sciences
Scopus
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SciELO
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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 Yamari, Imane Mujer Hassan II Univ Casablanca - Chile
2 Abchir, Oussama Hombre Hassan II Univ Casablanca - Chile
3 Mali, Suraj N. Hombre Birla Inst Technol - India
4 Errougui, Abdelkbir - Hassan II Univ Casablanca - Chile
5 Talbi, Mohammed Hombre Hassan II Univ Casablanca - Chile
6 El Kouali, Mhammed - Hassan II Univ Casablanca - Chile
7 Chtita, Samir Hombre Hassan II Univ Casablanca - Chile

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Financiamiento



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