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Enhanced gene regulation by cooperation between mRNA decay and gene transcription
Indexado
WoS WOS:001002326000001
DOI 10.1016/J.BBAGRM.2023.194910
Año 2023
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



It has become increasingly clear in the last few years that gene expression in eukaryotes is not a linear process from mRNA synthesis in the nucleus to translation and degradation in the cytoplasm, but works as a circular one where the mRNA level is controlled by crosstalk between nuclear transcription and cytoplasmic decay pathways. One of the consequences of this crosstalk is the approximately constant level of mRNA. This is called mRNA buffering and happens when transcription and mRNA degradation act at compensatory rates. However, if transcription and mRNA degradation act additively, enhanced gene expression regulation occurs. In this work, we analyzed new and previously published genomic datasets obtained for several yeast mutants related to either transcription or mRNA decay that are not known to play any role in the other process. We show that some, which were presumed only transcription factors (Sfp1) or only decay factors (Puf3, Upf2/3), may represent examples of RNA-binding proteins (RBPs) that make specific crosstalk to enhance the control of the mRNA levels of their target genes by combining additive effects on transcription and mRNA stability. These results were mathemat-ically modeled to see the effects of RBPs when they have positive or negative effects on mRNA synthesis and decay rates. We found that RBPs can be an efficient way to buffer or enhance gene expression responses depending on their respective effects on transcription and mRNA stability.

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Disciplinas de Investigación



WOS
Biochemistry & Molecular Biology
Biophysics
Scopus
Molecular Biology
Genetics
Biophysics
Structural Biology
Biochemistry
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 García-Martínez, José Hombre Univ Valencia - España
2 Singh, Abhyudai - Univ Delaware - Estados Unidos
3 Medina, Daniel Hombre Univ Valencia - España
Universidad San Sebastián - Chile
4 Chavez, Sebastian Hombre Univ Seville - España
Agencia Andaluza Conocimiento - España
5 Perez-Ortin, Jose E. Hombre Univ Valencia - España

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Financiamiento



Fuente
Junta de Andalucía

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Agradecimientos



Agradecimiento
Funding This work was funded with grants PID2020-112853GB-C31, and RED2018-102467-T to J.E.P-O., and BFU2016-77728-C3-1-P to S.C. all of them funded by MCIN/AEI/10.13039/501100011033 and grant BIO-271 from Junta de Andalucia to S.C.

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