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Comparative genomics of <i>Stutzerimonas balearica</i> (<i>Pseudomonas balearica</i>): diversity, habitats, and biodegradation of aromatic compounds
Indexado
WoS WOS:000999492300001
Scopus SCOPUS_ID:85161277094
DOI 10.3389/FMICB.2023.1159176
Año 2023
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species.

Revista



Revista ISSN
Frontiers In Microbiology 1664-302X

Métricas Externas



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Disciplinas de Investigación



WOS
Microbiology
Scopus
Sin Disciplinas
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 Salva-Serra, Francisco Hombre Univ Balear Isl - España
Univ Gothenburg - Suecia
Universitat de les Illes Balears - España
Sahlgrenska Akademin - Suecia
2 PEREZ-PANTOJA, DANILO RODRIGO Hombre Universidad Tecnológica Metropolitana - Chile
3 DONOSO-LUNA, RAUL ANDRES Hombre Universidad Tecnológica Metropolitana - Chile
Centro de Ecología Aplicada y Sustentabilidad - Chile
Centro de Ecología Aplicada y Sustentabilidad (CAPES) - Chile
4 Jaen-Luchoro, D. Hombre Univ Gothenburg - Suecia
Sahlgrenska Akademin - Suecia
5 Fernandez-Juarez, Victor Hombre Univ Copenhagen - Dinamarca
Københavns Universitet - Dinamarca
6 Engstrom-Jakobsson, Hedvig Mujer Univ Gothenburg - Suecia
Sahlgrenska Akademin - Suecia
7 Moore, Edward R. B. Hombre Univ Gothenburg - Suecia
Sahlgrenska Akademin - Suecia
8 Lalucat, Jorge Hombre Univ Balear Isl - España
Universitat de les Illes Balears - España
9 Bennasar-Figueras, Antoni Hombre Univ Balear Isl - España
Universitat de les Illes Balears - España

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Financiamiento



Fuente
FONDECYT
Ministerio de Economía y Competitividad
Fondo Nacional de Desarrollo Científico y Tecnológico
Universidad Tecnológica Metropolitana
European Regional Development Fund
Govern de les Illes Balears
Birjand University of Medical Sciences
Spanish MINECO
Department of Clinical Microbiology, Sahlgrenska University Hospital
Department of Clinical Microbiology
Sahlgrenska Universitetssjukhuset
Sahlgrenska Academy of the University of Gothenburg, Sweden
Sahlgrenska Academy of the University of Gothenburg
Fund of Scientific and Technological Equipment, year 2019, Universidad Tecnologica Metropolitana
ANID-PIA/BASAL of the Chilean government
CCUG Project: Genomics and Proteomics Research on Bacterial Diversity
Government of the Balearic Islands (FEDER co-funding)

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Agradecimientos



Agradecimiento
This work was supported by the Spanish MINECO through projects CGL2009-12180 and Consolider CSD2009-00006, as well as funds for competitive research groups from the Government of the Balearic Islands (the last two funds with FEDER co-funding). The DNA sequencing and analytical work was funded, in part, by the CCUG Project: Genomics and Proteomics Research on Bacterial Diversity. The CCUG is supported by the Department of Clinical Microbiology, Sahlgrenska University Hospital and the Sahlgrenska Academy of the University of Gothenburg, Sweden. DP-P and RD acknowledge the support of the FONDECYT 1201741, FONDECYT 11220354, and ANID-PIA/BASAL FB0002 grants of the Chilean government, and the LE19-05 project supported by the Fund of Scientific and Technological Equipment, year 2019, Universidad Tecnologica Metropolitana.
The authors acknowledge the staff at the Culture Collection University of Gothenburg (CCUG) for maintaining and providing the strains. Max Häggblom and Norberto Palleroni (in memoriam), at the Department of Biochemistry and Microbiology (Rutgers University, NJ, United States), are acknowledged for providing strain st101 (= CCUG 66667). Shokouh Ghafari, at the Infectious Diseases Research Center (Birjand University of Medical Sciences, Birjand, Iran), is acknowledged for providing strain Z8 (= CCUG 70972). Anders Malmborg and the staff at the Substrate Department of the Department of Clinical Microbiology, Sahlgrenska University Hospital, are acknowledged for media preparation. The computations were partially performed on resources provided by the Swedish National Infrastructure for Computing (SNIC) through the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) under project SNIC 2019/8-176.
The authors acknowledge the staff at the Culture Collection University of Gothenburg (CCUG) for maintaining and providing the strains. Max Häggblom and Norberto Palleroni (in memoriam), at the Department of Biochemistry and Microbiology (Rutgers University, NJ, United States), are acknowledged for providing strain st101 (= CCUG 66667). Shokouh Ghafari, at the Infectious Diseases Research Center (Birjand University of Medical Sciences, Birjand, Iran), is acknowledged for providing strain Z8 (= CCUG 70972). Anders Malmborg and the staff at the Substrate Department of the Department of Clinical Microbiology, Sahlgrenska University Hospital, are acknowledged for media preparation. The computations were partially performed on resources provided by the Swedish National Infrastructure for Computing (SNIC) through the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) under project SNIC 2019/8-176.
The authors acknowledge the staff at the Culture Collection University of Gothenburg (CCUG) for maintaining and providing the strains. Max Häggblom and Norberto Palleroni (in memoriam), at the Department of Biochemistry and Microbiology (Rutgers University, NJ, United States), are acknowledged for providing strain st101 (= CCUG 66667). Shokouh Ghafari, at the Infectious Diseases Research Center (Birjand University of Medical Sciences, Birjand, Iran), is acknowledged for providing strain Z8 (= CCUG 70972). Anders Malmborg and the staff at the Substrate Department of the Department of Clinical Microbiology, Sahlgrenska University Hospital, are acknowledged for media preparation. The computations were partially performed on resources provided by the Swedish National Infrastructure for Computing (SNIC) through the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) under project SNIC 2019/8-176.

Muestra la fuente de financiamiento declarada en la publicación.