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| DOI | 10.1111/2041-210X.14167 | ||||
| Año | 2023 | ||||
| Tipo | artículo de investigación |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
Researchers can investigate many aspects of animal ecology through noninvasive photo–identification. Photo–identification is becoming more efficient as matching individuals between photos is increasingly automated. However, the convolutional neural network models that have facilitated this change need many training images to generalize well. As a result, they have often been developed for individual species that meet this threshold. These single-species methods might underperform, as they ignore potential similarities in identifying characteristics and the photo–identification process among species. In this paper, we introduce a multi-species photo–identification model based on a state-of-the-art method in human facial recognition, the ArcFace classification head. Our model uses two such heads to jointly classify species and identities, allowing species to share information and parameters within the network. As a demonstration, we trained this model with 50,796 images from 39 catalogues of 24 cetacean species, evaluating its predictive performance on 21,192 test images from the same catalogues. We further evaluated its predictive performance with two external catalogues entirely composed of identities that the model did not see during training. The model achieved a mean average precision (MAP) of 0.869 on the test set. Of these, 10 catalogues representing seven species achieved a MAP score over 0.95. For some species, there was notable variation in performance among catalogues, largely explained by variation in photo quality. Finally, the model appeared to generalize well, with the two external catalogues scoring similarly to their species' counterparts in the larger test set. From our cetacean application, we provide a list of recommendations for potential users of this model, focusing on those with cetacean photo–identification catalogues. For example, users with high quality images of animals identified by dorsal nicks and notches should expect near optimal performance. Users can expect decreasing performance for catalogues with higher proportions of indistinct individuals or poor quality photos. Finally, we note that this model is currently freely available as code in a GitHub repository and as a graphical user interface, with additional functionality for collaborative data management, via Happywhale.com.
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | Patton, Philip T. | Hombre |
Hawaiʻi Institute of Marine Biology - Estados Unidos
NOAA Pacific Islands Fisheries Science Center - Estados Unidos Univ Hawaii Manoa - Estados Unidos NOAA Fisheries Pacific Isl Fisheries Sci Ctr - Estados Unidos |
| 2 | Cheeseman, Ted | - |
Southern Cross University - Australia
Happywhale.com - Estados Unidos Southern Cross Univ - Australia Happywhale com - Estados Unidos |
| 3 | Abe, Kenshin | - |
Preferred Networks, Inc. - Japón
Preferred Networks Inc - Japón |
| 4 | Yamaguchi, Taiki | Hombre |
Preferred Networks, Inc. - Japón
Preferred Networks Inc - Japón |
| 5 | Reade, Walter | Hombre |
Google LLC - Estados Unidos
Google - Estados Unidos |
| 6 | Southerland, Ken | - |
Happywhale.com - Estados Unidos
Happywhale com - Estados Unidos |
| 7 | Howard, Addison | - |
Google LLC - Estados Unidos
Google - Estados Unidos |
| 8 | Oleson, Erin M. | Mujer |
NOAA Pacific Islands Fisheries Science Center - Estados Unidos
NOAA Fisheries Pacific Isl Fisheries Sci Ctr - Estados Unidos |
| 9 | Allen, Jason B. | Hombre |
Mote Marine Laboratory - Estados Unidos
Chicago Zool Soc Sarasota Dolphin Res Program - Estados Unidos Mote Marine Laboratory & Aquarium - Estados Unidos |
| 10 | Ashe, Erin | Mujer |
Oceans Initiative - Estados Unidos
Oceans Initiat - Estados Unidos |
| 11 | Athayde, Aline | Mujer |
Projeto Baleia à Vista (ProBaV) - Brasil
Projeto Baleia Vista ProBaV - Brasil |
| 12 | Baird, Robin W. | Hombre |
Cascadia Research Collective - Estados Unidos
Cascadia Res Collect - Estados Unidos |
| 13 | Basran, Charla | Mujer |
Haskoli Islands - Islandia
Univ Iceland - Islandia |
| 14 | CABRERA-VICENCIO, ENRIQUE SEGUNDO | Mujer |
Centro de Conservación Cetacea - Chile
Ctr Conservac Cetacea CCC - Chile |
| 15 | Calambokidis, John | Hombre |
Cascadia Research Collective - Estados Unidos
Cascadia Res Collect - Estados Unidos |
| 16 | Cardoso, Júlio | Hombre |
Projeto Baleia à Vista (ProBaV) - Brasil
Projeto Baleia Vista ProBaV - Brasil |
| 17 | Carroll, Emma L. | Mujer |
School of Biological Sciences - Nueva Zelanda
Univ Auckland Waipapa Taumata Rau - Nueva Zelanda |
| 18 | Cesario, Amina | Mujer |
Tethys Research Institute - Italia
The University of Hong Kong, Swire Institute of Marine Science - Hong Kong Tethys Res Inst - Italia Univ Hong Kong - China |
| 19 | Cheney, Barbara J. | Mujer |
University of Aberdeen - Reino Unido
UNIV ABERDEEN - Reino Unido |
| 20 | Corsi, Enrico | Hombre |
Cascadia Research Collective - Estados Unidos
Cascadia Res Collect - Estados Unidos |
| 21 | Currie, Jens | Hombre |
Hawaiʻi Institute of Marine Biology - Estados Unidos
Pacific Whale Foundation - Estados Unidos Univ Hawaii Manoa - Estados Unidos Pacific Whale Fdn - Estados Unidos |
| 22 | Durban, John W. | Hombre |
SeaLife Response - Estados Unidos
SR3 SeaLife Response Rehabil & Res - Estados Unidos |
| 23 | Falcone, Erin A. | Mujer |
Marine Ecology and Telemetry Research - Estados Unidos
Marine Ecol & Telemetry Res - Estados Unidos |
| 24 | Fearnbach, Holly | Mujer |
SeaLife Response - Estados Unidos
SR3 SeaLife Response Rehabil & Res - Estados Unidos |
| 25 | Flynn, Kiirsten | - |
Cascadia Research Collective - Estados Unidos
Cascadia Res Collect - Estados Unidos |
| 26 | Franklin, Trish | Mujer |
Southern Cross University - Australia
The Oceania Project - Australia Southern Cross Univ - Australia Oceania Project - Australia |
| 27 | Franklin, Wally | Hombre |
Southern Cross University - Australia
The Oceania Project - Australia Southern Cross Univ - Australia Oceania Project - Australia |
| 28 | Vernazzani, B. G. | Mujer |
Centro de Conservación Cetacea - Chile
Pacific Whale Foundation - Estados Unidos Ctr Conservac Cetacea CCC - Chile Pacific Whale Fdn - Estados Unidos |
| 29 | Genov, Tilen | Hombre |
Morigenos - Slovenian Marine Mammal Society - Eslovenia
University of St Andrews - Reino Unido Morigenos Slovenian Marine Mammal Soc - Eslovenia Univ St Andrews - Reino Unido |
| 30 | Hill, Marie | Mujer |
NOAA Pacific Islands Fisheries Science Center - Estados Unidos
School of Ocean and Earth Science and Technology - Estados Unidos NOAA Fisheries Pacific Isl Fisheries Sci Ctr - Estados Unidos Res Corp Univ Hawaii - Estados Unidos |
| 31 | Johnston, David R. | Hombre |
University of Otago - Nueva Zelanda
UNIV OTAGO - Nueva Zelanda |
| 32 | Keene, Erin L. | Mujer |
Marine Ecology and Telemetry Research - Estados Unidos
Marine Ecol & Telemetry Res - Estados Unidos |
| 33 | Mahaffy, Sabre D. | - |
Cascadia Research Collective - Estados Unidos
Cascadia Res Collect - Estados Unidos |
| 34 | McGuire, Tamara L. | Mujer |
The Cook Inlet Beluga Whale Photo-ID Project - Estados Unidos
Cook Inlet Beluga Whale Photoid Project - Estados Unidos |
| 35 | McPherson, Liah | - |
Hawaiʻi Institute of Marine Biology - Estados Unidos
Univ Hawaii Manoa - Estados Unidos |
| 36 | Meyer, Catherine | Mujer |
School of Biological Sciences - Nueva Zelanda
UNIV AUCKLAND - Nueva Zelanda |
| 37 | Michaud, Robert | Hombre |
Groupe de Recherche et d’Éducation sur les Mammifères Marins (GREMM) - Canadá
Grp Rech & Educ Mammiferes Marins GREMM - Canadá |
| 38 | Miliou, Anastasia | Mujer |
Archipelagos Institute of Marine Conservation - Grecia
Archipelagos Inst Marine Conservat - Grecia |
| 39 | Orbach, Dara N. | Mujer |
Texas A and M University - Corpus Christi - Estados Unidos
Texas A&M Univ Corpus Christi - Estados Unidos |
| 40 | Pearson, Heidi C. | Mujer |
University of Alaska Southeast - Estados Unidos
Univ Alaska Southeast - Estados Unidos |
| 41 | Rasmussen, Marianne H. | Mujer |
Haskoli Islands - Islandia
Univ Iceland - Islandia |
| 42 | Rayment, William J. | Hombre |
University of Otago - Nueva Zelanda
UNIV OTAGO - Nueva Zelanda |
| 43 | Rinaldi, Caroline | Mujer |
Association Evasion Tropicale - Guadalupe
Assoc Evas Tropicale - Francia |
| 44 | Rinaldi, Renato | Hombre |
Association Evasion Tropicale - Guadalupe
Assoc Evas Tropicale - Francia |
| 45 | Siciliano, Salvatore | Hombre |
Fundacao Oswaldo Cruz - Brasil
Escola Nacl Saude Publ FIOCRUZ - Brasil |
| 46 | Stack, Stephanie | Mujer |
Pacific Whale Foundation - Estados Unidos
Pacific Whale Foundation Australia - Australia Pacific Whale Fdn Australia - Australia |
| 47 | Tintore, Beatriz | Mujer |
Archipelagos Institute of Marine Conservation - Grecia
Archipelagos Inst Marine Conservat - Grecia |
| 48 | Torres, Leigh G. | Mujer |
Oregon State University - Estados Unidos
Oregon State Univ - Estados Unidos |
| 49 | Towers, Jared R. | Hombre |
Bay Cetology - Canadá
Bay Cetol - Canadá |
| 50 | Trotter, Cameron | Hombre |
Newcastle University - Reino Unido
Newcastle Univ - Reino Unido |
| 51 | Tyson Moore, Reny | Mujer |
Mote Marine Laboratory - Estados Unidos
Chicago Zool Soc Sarasota Dolphin Res Program - Estados Unidos Mote Marine Laboratory & Aquarium - Estados Unidos |
| 52 | Weir, Caroline R. | Mujer |
Falklands Conservation - Islas Malvinas
Falklands Conservat - Islas Malvinas |
| 53 | Wellard, Rebecca | Mujer |
Curtin University - Australia
Project ORCA - Australia Curtin Univ - Australia |
| 54 | Wells, Randall | Hombre |
Mote Marine Laboratory - Estados Unidos
Chicago Zool Soc Sarasota Dolphin Res Program - Estados Unidos Mote Marine Laboratory & Aquarium - Estados Unidos |
| 55 | Yano, Kymberly M. | Mujer |
NOAA Pacific Islands Fisheries Science Center - Estados Unidos
University of Otago - Nueva Zelanda NOAA Fisheries Pacific Isl Fisheries Sci Ctr - Estados Unidos UNIV OTAGO - Nueva Zelanda |
| 56 | Zaeschmar, Jochen R. | Hombre |
Far Out Ocean Research Collective - Nueva Zelanda
Far Out Ocean Res Collect - Nueva Zelanda |
| 57 | Bejder, Lars | Hombre |
Hawaiʻi Institute of Marine Biology - Estados Unidos
Aarhus Universitet - Dinamarca Univ Hawaii Manoa - Estados Unidos Aarhus Univ - Dinamarca |
| Fuente |
|---|
| National Science Foundation |
| National Oceanic and Atmospheric Administration |
| NOAA Fisheries QUEST |
| University of Hawaii Information Technology Services |
| NOAA Fisheries QUEST Fellowship |
| Agradecimiento |
|---|
| We thank the countless individuals who collected and/or processed the nearly 85,000 images used in this study and those who assisted, particularly those who sorted these images from the millions that did not end up in the catalogues. Additionally, we thank the other Kaggle competitors who helped develop the ideas, models and data used here, particularly those who released their datasets to the public. The graduate assistantship for Philip T. Patton was funded by the NOAA Fisheries QUEST Fellowship. This paper represents HIMB and SOEST contribution numbers 1932 and 11679, respectively. The technical support and advanced computing resources from University of Hawaii Information Technology Services—Cyberinfrastructure, funded in part by the National Science Foundation CC* awards # 2201428 and # 2232862 are gratefully acknowledged. Every photo–identification image was collected under permits according to relevant national guidelines, regulation and legislation. |
| National Oceanic and Atmospheric Administration; NOAA Fisheries QUEST Fellowship; University of Hawaii Information Technology Services; National Science Foundation, Grant/Award Number: 2232862 and 2201428 |