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Metabolic Modeling and Bidirectional Culturing of Two Gut Microbes Reveal Cross-Feeding Interactions and Protective Effects on Intestinal Cells
Indexado
WoS WOS:000846845500001
Scopus SCOPUS_ID:85140976463
DOI 10.1128/MSYSTEMS.00646-22
Año 2022
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



The gut microbiota is constituted by thousands of microbial interactions, some of which correspond to the exchange of metabolic by-products or cross-feeding. Inulin and xylan are two major dietary polysaccharides that are fermented by members of the human gut microbiota, resulting in different metabolic profiles. Here, we integrated community modeling and bidirectional culturing assays to study the metabolic interactions between two gut microbes, Phocaeicola dorei and Lachnoclostridium symbiosum, growing in inulin or xylan, and how they provide a protective effect in cultured cells. P. dorei (previously belonging to the Bacteroides genus) was able to consume inulin and xylan, while L. symposium only used certain inulin fractions to produce butyrate as a major end product. Constrained-based flux simulations of refined genome-scale metabolic models of both microbes predicted high lactate and succinate cross-feeding fluxes between P. dorei and L. symbiosum when growing in each fiber. Bidirectional culture assays in both substrates revealed that L. symbiosum growth increased in the presence of P. dorei. Carbohydrate consumption analyses showed a faster carbohydrate consumption in cocultures compared to monocultures. Lactate and succinate concentrations in bidirectional cocultures were lower than in monocultures, pointing to cross-feeding as initially suggested by the model. Butyrate concentrations were similar across all conditions. Finally, supernatants from both bacteria cultured in xylan in bioreactors significantly reduced tumor necrosis factor-a-induced inflammation in HT-29 cells and exerted a protective effect against the TcdB toxin in Caco-2 epithelial cells. Surprisingly, this effect was not observed in inulin cocultures. Overall, these results highlight the predictive value of metabolic models integrated with microbial culture assays for probing microbial interactions in the gut microbiota. They also provide an example of how metabolic exchange could lead to potential beneficial effects in the host.

Revista



Revista ISSN
M Systems 2379-5077

Métricas Externas



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Disciplinas de Investigación



WOS
Microbiology
Scopus
Sin Disciplinas
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 Hirmas, B. Mujer Pontificia Universidad Católica de Chile - Chile
2 Gasaly, Naschla - Universidad de Chile - Chile
3 Orellana, Guillermo Hombre Pontificia Universidad Católica de Chile - Chile
4 Vega-Sagardia, Marco Hombre Pontificia Universidad Católica de Chile - Chile
5 Saa, Pedro A. Hombre Pontificia Universidad Católica de Chile - Chile
6 GOTTELAND-RUSSELL, MARTIN MARIE BRUNO Hombre Universidad de Chile - Chile
7 GARRIDO-CORTES, DANIEL ANTONIO Hombre Pontificia Universidad Católica de Chile - Chile

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Financiamiento



Fuente
FONDEQUIP
FONDECYT Iniciación
Fondo Nacional de Desarrollo Científico y Tecnológico
Pontificia Universidad Católica de Chile
Fondecyt Regular
Pontificia Universidad Catolica de Chile (PUC) School of Engineering Seed Fund 2020

Muestra la fuente de financiamiento declarada en la publicación.

Agradecimientos



Agradecimiento
This work was funded by Fondecyt Regular 1190074, Fondecyt Iniciación 11190871 (to P.S.), FONDEQUIP EQM190070, and Pontificia Universidad Católica de Chile (PUC) School of Engineering SeedFund 2020. We thank Veronica Ortuzar and Sebastian Mendoza for their support in this project.
This work was funded by Fondecyt Regular 1190074, Fondecyt Iniciacion 11190871 (to P.S.), FONDEQUIP EQM190070, and Pontificia Universidad Catolica de Chile (PUC) School of Engineering Seed Fund 2020.

Muestra la fuente de financiamiento declarada en la publicación.