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Response to Cold: A Comparative Transcriptomic Analysis in Eight Cold-Adapted Yeasts
Indexado
WoS WOS:000767662700001
Scopus SCOPUS_ID:85126213704
DOI 10.3389/FMICB.2022.828536
Año 2022
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



Microorganisms have evolved to colonize all biospheres, including extremely cold environments, facing several stressor conditions, mainly low/freezing temperatures. In general, terms, the strategies developed by cold-adapted microorganisms include the synthesis of cryoprotectant and stress-protectant molecules, cold-active proteins, especially enzymes, and membrane fluidity regulation. The strategy could differ among microorganisms and concerns the characteristics of the cold environment of the microorganism, such as seasonal temperature changes. Microorganisms can develop strategies to grow efficiently at low temperatures or tolerate them and grow under favorable conditions. These differences can be found among the same kind of microorganisms and from the same cold habitat. In this work, eight cold-adapted yeasts isolated from King George Island, subAntarctic region, which differ in their growth properties, were studied about their response to low temperatures at the transcriptomic level. Sixteen ORFeomes were assembled and used for gene prediction and functional annotation, determination of gene expression changes, protein flexibilities of translated genes, and codon usage bias. Putative genes related to the response to all main kinds of stress were found. The total number of differentially expressed genes was related to the temperature variation that each yeast faced. The findings from multiple comparative analyses among yeasts based on gene expression changes and protein flexibility by cellular functions and codon usage bias raise significant differences in response to cold among the studied Antarctic yeasts. The way a yeast responds to temperature change appears to be more related to its optimal temperature for growth (OTG) than growth velocity. Yeasts with higher OTG prepare to downregulate their metabolism to enter the dormancy stage. In comparison, yeasts with lower OTG perform minor adjustments to make their metabolism adequate and maintain their growth at lower temperatures.

Revista



Revista ISSN
Frontiers In Microbiology 1664-302X

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Disciplinas de Investigación



WOS
Microbiology
Scopus
Sin Disciplinas
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 BAEZA-CANCINO, MARCELO ENRIQUE Hombre Universidad de Chile - Chile
2 Zuniga, Sergio Hombre Universidad de Chile - Chile
3 Peragallo, Vicente Hombre Universidad de Chile - Chile
4 Gutierrez, Fernando Hombre Universidad de Chile - Chile
5 BARAHONA-CRISOSTOMO, SALVADOR KARIM Hombre Universidad de Chile - Chile
6 Alcaino-Gorman, Jennifer Mujer Universidad de Chile - Chile
7 CIFUENTES-GUZMAN, VICTOR HUGO Hombre Universidad de Chile - Chile

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Financiamiento



Fuente
Fondo Nacional de Desarrollo Científico y Tecnológico
Agencia Nacional de Investigación y Desarrollo
Agencia Nacional de Investigaci?n y Desarrollo

Muestra la fuente de financiamiento declarada en la publicación.

Agradecimientos



Agradecimiento
This research was funded by Agencia Nacional de Investigacion y Desarrollo, grant number Fondecyt 1180233.
This research was funded by Agencia Nacional de Investigaci?n y Desarrollo, grant number Fondecyt 1180233.

Muestra la fuente de financiamiento declarada en la publicación.