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| DOI | 10.1007/S00338-021-02213-8 | ||||
| Año | 2022 | ||||
| Tipo | artículo de investigación |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
The spiny lobster Panulirus argus is an ecologically relevant species in shallow water coral reefs and the target of the most lucrative fishery in the greater Caribbean region. This study reports, for the first time, the nervous system transcriptome of the Caribbean spiny lobster Panulirus argus assembled from short Illumina 150 bp PE raw reads. A total of 60,213,359 pairs of raw reads were assembled using the Elvers pipeline. The assembly resulted in a total of 206,273 transcripts with N50 of 1341 bp and L50 of 23,665 contigs. Analysis of this filtered assembly by BUSCO resulted in the identification of 92.49% universal orthologs. Analysis of core GFs completeness with the Arthropoda database resulted in the identification of 77.8% of 1936 Core GFs. Functional gene annotation was conducted using the web server TRAPID and the dammit pipeline. TRAPID and dammit provided functional annotation for 25,617 and 57,984 of transcripts, respectively. Lastly, gene enrichment analyses were conducted using the Gene ontology (GO) and KEGG pathway analyses (Kaas) databases. This transcriptome represents the first step to improving the understanding of the molecular underpinnings of viral infection and behavioral immunity (i.e., social distancing) in this iconic coral reef-associated invertebrate. The development of this and other genomic resources is of utmost importance as they will improve the understanding of the biology of P. argus while also aiding in fishery management and conservation strategies of this iconic coral reef-dwelling, heavily fished marine invertebrate.
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | BAEZA-MIGUELES, JUAN ANTONIO | Hombre |
Clemson Univ - Estados Unidos
Smithsonian Marine Stn Ft Pierce - Estados Unidos Universidad Católica del Norte - Chile Clemson University - Estados Unidos Smithsonian Marine Station - Estados Unidos |
| 2 | Veldsman, Werner Pieter | Hombre |
Chinese Univ Hong Kong - China
Univ Lausanneand - Suiza Chinese University of Hong Kong - Hong Kong Swiss Institute of Bioinformatics - Suiza SIB Swiss Institute of Bioinformatics - Suiza |
| 3 | Chu, Ka Hou | - |
Chinese Univ Hong Kong - China
Southern Marine Sci & Engn Guangdong Lab Guangzho - China Hong Kong Univ Sci & Technol - China Chinese University of Hong Kong - Hong Kong Hong Kong University of Science and Technology - Hong Kong Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) - Hong Kong |
| Fuente |
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| Research Grants Council, University Grants Committee |
| Collaborative Research Fund |
| Research Grants Council, Hong Kong Special Administrative Region, China |
| Agradecimiento |
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| JAB thanks Dr. Vincent P. Richards for bioinformatics support during the development of this project. The comments of two anonymous referees permitted us to improve earlier versions of this manuscript. The work presented in this paper was partially supported by a grant from the Collaborative Research Fund (project no. C4042-14G), Research Grants Council, Hong Kong Special Administrative Region, China. |
| JAB thanks Dr. Vincent P. Richards for bioinformatics support during the development of this project. The comments of two anonymous referees permitted us to improve earlier versions of this manuscript. The work presented in this paper was partially supported by a grant from the Collaborative Research Fund (project no. C4042-14G), Research Grants Council, Hong Kong Special Administrative Region, China. |