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Porcine reproductive and respiratory syndrome virus 2 (PRRSV-2) genetic diversity and occurrence of wild type and vaccine-like strains in the United States swine industry
Indexado
WoS WOS:000755334700012
Scopus SCOPUS_ID:85119955204
DOI 10.1371/JOURNAL.PONE.0259531
Año 2021
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



Porcine reproductive and respiratory syndrome virus genotype 2 (PRRSV-2) genetic diversity in the U.S. was assessed using a database comprising 10 years’ worth of sequence data obtained from swine production systems routine monitoring and outbreak investigations. A total of 26,831 ORF5 PRRSV-2 sequences from 34 production systems were included in this analysis. Within group mean genetic distance (i.e. mean proportion of nucleotide differences within ORF5) per year according to herd type was calculated for all PRRSV-2 sequences. The percent nucleotide difference between each sequence and the ORF5 sequences from four commercially available PRRSV-2 vaccines (Ingelvac PRRS MLV, Ingelvac PRRS ATP, Fostera PRRS, and Prevacent PRRS) within the same lineage over time was used to classify sequences in wild-type or vaccine-like. The mean ORF5 genetic distance fluctuated from 0.09 to 0.13, being generally smaller in years in which there was a relative higher frequency of dominant lineage. Vaccine-like sequences comprised about one fourth of sequences obtained through routine monitoring of PRRS. We found that lineage 5 sequences were mostly Ingelvac PRRS MLV-like. Lineage 8 sequences up to 2011 were 62.9% Ingelvac PRRS ATP-like while the remaining were wild-type viruses. From 2012 onwards, 51.9% of lineage 8 sequences were Ingelvac PRRS ATP-like, 45.0% were Fostera PRRS-like, and only 3.2% were wild-type. For lineage 1 sequences, 0.1% and 1.7% of the sequences were Prevacent PRRS-like in 2009–2018 and 2019, respectively. These results suggest that repeated introductions of vaccine-like viruses through use of modified live vaccines might decrease within-lineage viral diversity as vaccine-like strains become more prevalent. Overall, this compilation of private data from routine monitoring provides valuable information on PRRSV viral diversity.

Revista



Revista ISSN
P Lo S One 1932-6203

Métricas Externas



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Disciplinas de Investigación



WOS
Biology
Multidisciplinary Sciences
Scopus
Sin Disciplinas
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 Kikuti, Mariana Mujer University of Minnesota Twin Cities - Estados Unidos
Univ Minnesota - Estados Unidos
2 Sanhueza, Juan Hombre University of Minnesota Twin Cities - Estados Unidos
Universidad Católica de Temuco - Chile
Univ Minnesota - Estados Unidos
3 Vilalta, C. Hombre University of Minnesota Twin Cities - Estados Unidos
UpNorth Analytics - España
Univ Minnesota - Estados Unidos
UpNorth Analyt - España
4 Paploski, Igor Adolfo Dexheimer Hombre University of Minnesota Twin Cities - Estados Unidos
Univ Minnesota - Estados Unidos
5 VanderWaal, Kimberly Mujer University of Minnesota Twin Cities - Estados Unidos
Univ Minnesota - Estados Unidos
6 Corzo, Cesar A. Hombre University of Minnesota Twin Cities - Estados Unidos
Univ Minnesota - Estados Unidos

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Financiamiento



Fuente
National Science Foundation
National Institute of Food and Agriculture
Swine Health Information Center (SHIC)
Upnorth Analytics
National Institutes of Health (NIFA-NSF-NIH) Ecology and Evolution of Infectious Disease

Muestra la fuente de financiamiento declarada en la publicación.

Agradecimientos



Agradecimiento
This project was funded by the Swine Health Information Center (SHIC, www.swinehealth.org), Project #19-235 SHIC (CAC, MK, JS, CV). Funding was also provided by the joint National Institute of Food and Agriculture, National Science Foundation, and National Institutes of Health (NIFA-NSF-NIH) Ecology and Evolution of Infectious Disease (www.nsf.gov), award 2019-67015-29918 (KVW, IADP). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. Upnorth Analytics provided financial support in the form of author' salary (CV). The specific roles of these authors are articulated in the 'author contributions' section.

Muestra la fuente de financiamiento declarada en la publicación.