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Lignin induced iron reduction by novel sp., <i>Tolumonas lignolytic</i> BRL6-1
Indexado
WoS WOS:000573848800062
Scopus SCOPUS_ID:85091192567
DOI 10.1371/JOURNAL.PONE.0233823
Año 2020
Tipo artículo de investigación

Citas Totales

Autores Afiliación Chile

Instituciones Chile

% Participación
Internacional

Autores
Afiliación Extranjera

Instituciones
Extranjeras


Abstract



Lignin is the second most abundant carbon polymer on earth and despite having more fuel value than cellulose, it currently is considered a waste byproduct in many industrial lignocellulose applications. Valorization of lignin relies on effective and green methods of de-lignification, with a growing interest in the use of microbes. Here we investigate the physiology and molecular response of the novel facultative anaerobic bacterium,Tolumonas lignolyticaBRL6-1, to lignin under anoxic conditions. Physiological and biochemical changes were compared between cells grown anaerobically in either lignin-amended or unamended conditions. In the presence of lignin, BRL6-1 accumulates higher biomass and has a shorter lag phase compared to unamended conditions, and 14% of the proteins determined to be significantly higher in abundance by log(2)fold-change of 2 or greater were related to Fe(II) transport in late logarithmic phase. Ferrozine assays of the supernatant confirmed that Fe(III) was bound to lignin and reduced to Fe(II) only in the presence of BRL6-1, suggesting redox activity by the cells. LC-MS/MS analysis of the secretome showed an extra band at 20 kDa in lignin-amended conditions. Protein sequencing of this band identified a protein of unknown function with homology to enzymes in the radical SAM superfamily. Expression of this protein in lignin-amended conditions suggests its role in radical formation. From our findings, we suggest that BRL6-1 is using a protein in the radical SAM superfamily to interact with the Fe(III) bound to lignin and reducing it to Fe(II) for cellular use, increasing BRL6-1 yield under lignin-amended conditions. This interaction potentially generates organic free radicals and causes a radical cascade which could modify and depolymerize lignin. Further research should clarify the extent to which this mechanism is similar to previously described aerobic chelator-mediated Fenton chemistry or radical producing lignolytic enzymes, such as lignin peroxidases, but under anoxic conditions.

Revista



Revista ISSN
P Lo S One 1932-6203

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Disciplinas de Investigación



WOS
Biology
Multidisciplinary Sciences
Scopus
Sin Disciplinas
SciELO
Sin Disciplinas

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Publicaciones WoS (Ediciones: ISSHP, ISTP, AHCI, SSCI, SCI), Scopus, SciELO Chile.

Colaboración Institucional



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Autores - Afiliación



Ord. Autor Género Institución - País
1 Chaput, Gina Mujer Univ Massachusetts - Estados Unidos
University of Massachusetts Amherst - Estados Unidos
2 Billings, Andrew F. Hombre Univ Massachusetts - Estados Unidos
University of Massachusetts Amherst - Estados Unidos
3 DeDiego, Lani - Univ Massachusetts - Estados Unidos
University of Massachusetts Amherst - Estados Unidos
4 Orellana, Roberto Hombre Universidad de Playa Ancha - Chile
5 Adkins, Joshua N. Hombre Pacific Northwest Natl Lab - Estados Unidos
Pacific Northwest National Laboratory - Estados Unidos
6 Nicora, Carrie D. Mujer Pacific Northwest Natl Lab - Estados Unidos
Pacific Northwest National Laboratory - Estados Unidos
7 Kim, Young-Mo Mujer Pacific Northwest Natl Lab - Estados Unidos
Pacific Northwest National Laboratory - Estados Unidos
8 Chu, Rosalie Mujer Pacific Northwest Natl Lab - Estados Unidos
Pacific Northwest National Laboratory - Estados Unidos
9 Simmons, Blake Hombre US DOE - Estados Unidos
U.S. Department of Energy Joint Genome Institute - Estados Unidos
10 DeAngelis, Kristen M. Mujer Univ Massachusetts - Estados Unidos
University of Massachusetts Amherst - Estados Unidos

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Financiamiento



Fuente
U.S. Department of Energy
Lawrence Berkeley National Laboratory
Office of Biological and Environmental Research
Office of Science
U.S. Environmental Protection Agency
DOE Office of Science
Biological and Environmental Research
Environmental Protection Agency
U. S. Department of Energy
U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research
U.S. Environmental Protection
U. S. Environmental Protection
University of Massachusetts Mass Spectrometry Center

Muestra la fuente de financiamiento declarada en la publicación.

Agradecimientos



Agradecimiento
B.S.; K.M.D.; This work was part of the DOE Joint BioEnergy Institute (http://www.jbei.org) supported by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research, through contract DE-AC02-05CH11231 between Lawrence Berkeley National Laboratory and the U.S. Department of Energy. K.M.D.; This research was performed using resources at the DOE Environmental Molecular Sciences Laboratory (grid.436923.9), which is an DOE Office of Science User Facilities sponsored by the Office of Biological and Environmental Research and operated under Contract No. DE-AC05-76RL01830. G.C.; This publication was also developed under Assistance Agreement No. FP-91782301-0 awarded by the U.S. Environmental Protection. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
B.S.; K.M.D.; This work was part of the DOE Joint BioEnergy Institute (http://www.jbei.org) supported by the U. S. Department of Energy, Office of Science, Office of Biological and Environmental Research, through contract DEAC02-05CH11231 between Lawrence Berkeley National Laboratory and the U. S. Department of Energy. K.M.D.; This research was performed using resources at the DOE Environmental Molecular Sciences Laboratory (grid.436923.9), which is an DOE Office of Science User Facilities sponsored by the Office of Biological and Environmental Research and operated under Contract No. DE-AC05-76RL01830. G.C.; This publication was also developed under Assistance Agreement No. FP-91782301-0 awarded by the U. S. Environmental Protection. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. We are grateful to Steven Eyles for assistance with mass spectral data at the University of Massachusetts Mass Spectrometry Center. This publication was also developed with assistance from the U.S. Environmental Protection Agency, but it has not been formally reviewed by EPA. The views expressed in this document are solely those of the authors and do not necessarily reflect those of the Agency. EPA does not endorse any products or commercial services mentioned in this publication.

Muestra la fuente de financiamiento declarada en la publicación.