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The tuatara genome reveals ancient features of amniote evolution
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| DOI | 10.1038/S41586-020-2561-9 | ||||
| Año | 2020 | ||||
| Tipo | artículo de investigación |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
Abstract
The approximately 5-Gb tuatara (Sphenodon punctatus) genome assembly provides a resource for analysing amniote evolution, and highlights the imperative for meaningful cultural engagement with Indigenous communities in genome-sequencing endeavours.
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | Gemmell, Neil J. | Hombre |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 2 | Rutherford, Kim | - |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 3 | Prost, Stefan | Hombre |
Senckenberg Museum - Alemania
Natl Zool Garden - República de Sudáfrica Senckenberg Forschungsinstitut und Naturmuseum - Alemania South African National Biodiversity Institute - República de Sudáfrica LOEWE Ctr Translat Biodivers Genom - Alemania |
| 4 | Tollis, Marc | Hombre |
Arizona State Univ - Estados Unidos
No Arizona Univ - Estados Unidos Iowa State University - Estados Unidos Northern Arizona University - Estados Unidos Arizona State University - Estados Unidos School of Life Sciences - Estados Unidos NAU College of Engineering, Informatics, and Applied Sciences - Estados Unidos |
| 5 | Winter, David | Hombre |
Massey Univ - Nueva Zelanda
Massey University Manawatu - Nueva Zelanda Massey University - Nueva Zelanda |
| 6 | Macey, J. Robert | - |
Peralta Genom Inst - Estados Unidos
Peralta Genomics Institute - Estados Unidos |
| 7 | Adelson, David L. | Hombre |
Univ Adelaide - Australia
The University of Adelaide - Australia |
| 8 | Suh, Alexander | Hombre |
UPPSALA UNIV - Suecia
Evolutionary Biology Centre - Suecia Evolutionsbiologiskt centrum - Suecia |
| 9 | Bertozzi, Terry | Hombre |
Univ Adelaide - Australia
South Australian Museum - Australia The University of Adelaide - Australia |
| 10 | Grau, Jose H. | Hombre |
Amedes Med Dienstleistungen - Alemania
Humboldt Univ - Alemania Amedes Genetics - Alemania Humboldt-Universität zu Berlin - Alemania |
| 11 | Organ, Chris | Hombre |
Montana State Univ - Estados Unidos
Montana State University - Estados Unidos |
| 12 | Gardner, Paul P. | Hombre |
UNIV OTAGO - Nueva Zelanda
|
| 12 | Gardner, Paul P. | Hombre |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 13 | Muffato, Matthieu | Hombre |
European Bioinformat Inst - Reino Unido
European Bioinformatics Institute - Reino Unido EMBL’s European Bioinformatics Institute - Reino Unido |
| 14 | Patricio, Mateus | Hombre |
European Bioinformat Inst - Reino Unido
European Bioinformatics Institute - Reino Unido EMBL’s European Bioinformatics Institute - Reino Unido |
| 15 | Billis, Konstantinos | Hombre |
European Bioinformat Inst - Reino Unido
European Bioinformatics Institute - Reino Unido EMBL’s European Bioinformatics Institute - Reino Unido |
| 16 | Martin, Fergal J. | Hombre |
European Bioinformat Inst - Reino Unido
European Bioinformatics Institute - Reino Unido EMBL’s European Bioinformatics Institute - Reino Unido |
| 17 | Flicek, Paul | Hombre |
European Bioinformat Inst - Reino Unido
European Bioinformatics Institute - Reino Unido EMBL’s European Bioinformatics Institute - Reino Unido |
| 18 | Petersen, Bent | Hombre |
Univ Copenhagen - Dinamarca
University of Copenhagen, Faculty of Health Sciences - Dinamarca Det Sundhedsvidenskabelige Fakultet - Dinamarca |
| 19 | Kang, Lin | - |
Edward Via Coll Osteopath Med - Estados Unidos
The Edward Via College of Osteopathic Medicine - Estados Unidos |
| 20 | Michalak, Pawel | Hombre |
Edward Via Coll Osteopath Med - Estados Unidos
Virginia Maryland Coll Vet Med - Estados Unidos Univ Haifa - Israel The Edward Via College of Osteopathic Medicine - Estados Unidos Virginia-Maryland College of Veterinary Medicine - Estados Unidos University of Haifa - Israel |
| 21 | Buckley, Thomas R. | Hombre |
Manaaki Whenua Landcare Res - Nueva Zelanda
UNIV AUCKLAND - Nueva Zelanda University of Auckland, School of Biological Sciences - Nueva Zelanda Manaaki Whenua - Landcare Research - Nueva Zelanda Landcare Research, Auckland - Nueva Zelanda School of Biological Sciences - Nueva Zelanda |
| 22 | Wilson, Melissa | Mujer |
Arizona State Univ - Estados Unidos
Iowa State University - Estados Unidos Arizona State University - Estados Unidos School of Life Sciences - Estados Unidos |
| 23 | Cheng, Yuanyuan | - |
UNIV SYDNEY - Australia
The University of Sydney - Australia |
| 24 | Miller, Hilary | Mujer |
Biomatters - Nueva Zelanda
Biomatters Ltd. - Nueva Zelanda Biomatters Ltd - Nueva Zelanda |
| 25 | Schott, Ryan K. | Hombre |
Smithsonian Inst - Estados Unidos
Smithsonian National Museum of Natural History - Estados Unidos |
| 26 | Jordan, Melissa D. | Mujer |
New Zealand Inst Plant & Food Res - Nueva Zelanda
New Zealand Institute for Plant and Food Research - Nueva Zelanda New Zealand Inst Kant & Food Res - Nueva Zelanda Plant & Food Research, New Zealand - Nueva Zelanda |
| 27 | Newcomb, Richard D. | Hombre |
New Zealand Inst Plant & Food Res - Nueva Zelanda
New Zealand Institute for Plant and Food Research - Nueva Zelanda New Zealand Inst Kant & Food Res - Nueva Zelanda Plant & Food Research, New Zealand - Nueva Zelanda |
| 28 | ARROYO-GONZALEZ, JOSE IGNACIO | Hombre |
Pontificia Universidad Católica de Chile - Chile
|
| 29 | Valenzuela, Nicole | Mujer |
Iowa State Univ - Estados Unidos
Iowa State University - Estados Unidos |
| 30 | Hore, Tim A. | Hombre |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 31 | Renart, Jaime | Hombre |
CSIC UAM - España
CSIC-UAM - Instituto de Investigaciones Biomédicas Alberto Sols (IIBM) - España UAM - España CSIC-UAM - Instituto de Investigaciones Biomédicas Alberto Sols (IIBM) - España CSIC-UAM - Instituto de Investigaciones Biomédicas Sols-Morreale (IIBM) - España |
| 32 | Peona, Valentina | Mujer |
UPPSALA UNIV - Suecia
Evolutionary Biology Centre - Suecia Evolutionsbiologiskt centrum - Suecia |
| 33 | Peart, Claire R. | Mujer |
UPPSALA UNIV - Suecia
Ludwig Maximilian Univ Munich - Alemania Evolutionary Biology Centre - Suecia Ludwig-Maximilians-Universität München - Alemania Evolutionsbiologiskt centrum - Suecia |
| 34 | Warmuth, Vera M. | Mujer |
UPPSALA UNIV - Suecia
Ludwig Maximilian Univ Munich - Alemania Evolutionary Biology Centre - Suecia Ludwig-Maximilians-Universität München - Alemania Evolutionsbiologiskt centrum - Suecia |
| 35 | Zeng, Lu | - |
Univ Adelaide - Australia
The University of Adelaide - Australia |
| 36 | Kortschak, R. Daniel | - |
Univ Adelaide - Australia
The University of Adelaide - Australia |
| 37 | Raison, Joy M. | Mujer |
Univ Adelaide - Australia
The University of Adelaide - Australia |
| 38 | Zapata, Valeria Velasquez | Mujer |
Iowa State Univ - Estados Unidos
Iowa State University - Estados Unidos |
| 39 | Wu, Zhiqiang | - |
Iowa State Univ - Estados Unidos
Iowa State University - Estados Unidos |
| 40 | Santesmasses, Didac | - |
Univ Pompeu Fabra UPF - España
Universitat Pompeu Fabra Barcelona - España |
| 41 | Mariotti, Marco | Hombre |
Univ Pompeu Fabra UPF - España
Universitat Pompeu Fabra Barcelona - España |
| 42 | Guigo, Roderic | Hombre |
Univ Pompeu Fabra UPF - España
Universitat Pompeu Fabra Barcelona - España |
| 43 | Rupp, Shawn M. | Hombre |
Arizona State Univ - Estados Unidos
Iowa State University - Estados Unidos Arizona State University - Estados Unidos School of Life Sciences - Estados Unidos |
| 44 | Twort, Victoria G. | Mujer |
Manaaki Whenua Landcare Res - Nueva Zelanda
UNIV AUCKLAND - Nueva Zelanda University of Auckland, School of Biological Sciences - Nueva Zelanda Manaaki Whenua - Landcare Research - Nueva Zelanda Landcare Research, Auckland - Nueva Zelanda School of Biological Sciences - Nueva Zelanda |
| 45 | Dussex, Nicolas | Hombre |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 46 | Taylor, Helen | Mujer |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 47 | Abe, Hideaki | Hombre |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 48 | Bond, Donna M. | Mujer |
UNIV OTAGO - Nueva Zelanda
University of Otago - Nueva Zelanda |
| 49 | Paterson, James M. | Hombre |
Univ Canterbury - Nueva Zelanda
University of Canterbury - Nueva Zelanda |
| 50 | Mulcahy, Daniel G. | Hombre |
Smithsonian Inst - Estados Unidos
Smithsonian National Museum of Natural History - Estados Unidos Natl Museum Nat Hist - Estados Unidos |
| 51 | Gonzalez, Vanessa L. | Mujer |
Smithsonian Inst - Estados Unidos
Smithsonian National Museum of Natural History - Estados Unidos Natl Museum Nat Hist - Estados Unidos |
| 52 | Barbieri, Charles G. | Hombre |
Peralta Genom Inst - Estados Unidos
Peralta Genomics Institute - Estados Unidos |
| 53 | DeMeo, Dustin P. | Hombre |
Peralta Genom Inst - Estados Unidos
Peralta Genomics Institute - Estados Unidos |
| 54 | Pabinger, Stephan | Hombre |
Austrian Inst Technol AIT - Austria
Austrian Institute of Technology - Austria Ctr Hlth & Bioresources Mol Diagnost - Austria |
| 55 | Van Stijn, Tracey | Mujer |
AgResearch - Nueva Zelanda
AgResearch Invermay Agricultural Centre - Nueva Zelanda AgResearch Invermay - Nueva Zelanda |
| 56 | Clarke, Shannon | Mujer |
AgResearch - Nueva Zelanda
AgResearch Invermay Agricultural Centre - Nueva Zelanda AgResearch Invermay - Nueva Zelanda |
| 57 | Ryder, Oliver | Hombre |
San Diego Zoo Inst Conservat Res - Estados Unidos
San Diego Zoo Institute for Conservation Research - Estados Unidos San Diego Zoo Wildlife Alliance - Estados Unidos |
| 58 | Edwards, Scott V. | Hombre |
Harvard University - Estados Unidos
|
| 59 | Salzberg, Steven L. | Hombre |
Johns Hopkins Univ - Estados Unidos
Johns Hopkins University - Estados Unidos Johns Hopkins Department of Biomedical Engineering - Estados Unidos |
| 60 | Anderson, Lindsay | Mujer |
Victoria Univ Wellington - Nueva Zelanda
Victoria University of Wellington - Nueva Zelanda |
| 61 | Nelson, Nicola | Mujer |
Victoria Univ Wellington - Nueva Zelanda
Victoria University of Wellington - Nueva Zelanda |
| 62 | Stone, Clive | Hombre |
Ngatiwai Trust Board - Nueva Zelanda
|
| 63 | Stone, Clive | Hombre |
Ngatiwai Trust Board - Nueva Zelanda
|
| 63 | Ngatiwai Trust Board | Corporación | |
| 63 | Ngatiwai Trust Board | Corporación | |
| 64 | Smillie, Jim | - |
Ngatiwai Trust Board - Nueva Zelanda
|
| 65 | Edmonds, Haydn | Hombre |
Ngatiwai Trust Board - Nueva Zelanda
|
| Fuente |
|---|
| CONICYT |
| NIH |
| Comisión Nacional de Investigación Científica y Tecnológica |
| National Institutes of Health |
| Wellcome Trust |
| National Human Genome Research Institute |
| National Institute of General Medical Sciences |
| European Molecular Biology Laboratory |
| Allan Wilson Centre |
| University of Otago, New Zealand Department of Conservation |
| Ngatiwai iwi, Allan Wilson Centre, University of Otago |
| New Zealand Department of Conservation, New Zealand Genomics and Illumina |
| Agradecimiento |
|---|
| N.J.G. acknowledges the support of Ngatiwai iwi, Allan Wilson Centre, University of Otago, New Zealand Department of Conservation, New Zealand Genomics and Illumina. J.I.A. was supported by CONICYT National Doctoral Scholarship No. 21130515. M.W. was supported by NIH grant R35 GM124827. Ensembl annotation was supported by the Wellcome Trust (WT108749/Z/15/Z) and the European Molecular Biology Laboratory. We thank Ngati Koata, Te Atiawa o Te Waka-a-Maui, and Ngati Manuhiri iwi for granting permission to reuse tuatara samples obtained from Stephens Island (Takapourewa), North Brother Island and Little Barrier Island (Hauturu), respectively; all of the people involved in obtaining and curating the samples held in the Victoria University of Wellington tuatara collection; A. Zimin, D. Puiu, G. Marcais, J. Yorke and R. Crowhurst for help with and discussions about genome assembly; I. Fiddes, J. Armstrong and B. Paten for help with comparative genome alignments and annotation; the National eScience Infrastructure (NeSI) and Swedish National Infrastructure for Computing (SNIC) through the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) for computational support; R. McPhee for help with figures; and T. Braisher for manuscript coordination and editing. |
| Acknowledgements N.J.G. acknowledges the support of Ngatiwai iwi, Allan Wilson Centre, University of Otago, New Zealand Department of Conservation, New Zealand Genomics and Illumina. J.I.A. was supported by CONICYT National Doctoral Scholarship No. 21130515. M.W. was supported by NIH grant R35 GM124827. Ensembl annotation was supported by the Wellcome Trust (WT108749/Z/15/Z) and the European Molecular Biology Laboratory. We thank Ngāti Koata, Te Ātiawa o Te Waka-a-Māui, and Ngāti Manuhiri iwi for granting permission to reuse tuatara samples obtained from Stephens Island (Takapourewa), North Brother Island and Little Barrier Island (Hauturu), respectively; all of the people involved in obtaining and curating the samples held in the Victoria University of Wellington tuatara collection; A. Zimin, D. Puiu, G. Marcais, J. Yorke and R. Crowhurst for help with and discussions about genome assembly; I. Fiddes, J. Armstrong and B. Paten for help with comparative genome alignments and annotation; the National eScience Infrastructure (NeSI) and Swedish National Infrastructure for Computing (SNIC) through the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) for computational support; R. McPhee for help with figures; and T. Braisher for manuscript coordination and editing. |
| N.J.G. acknowledges the support of Ngatiwai iwi, Allan Wilson Centre, University of Otago, New Zealand Department of Conservation, New Zealand Genomics and Illumina. J.I.A. was supported by CONICYT National Doctoral Scholarship No. 21130515. M.W. was supported by NIH grant R35 GM124827. Ensembl annotation was supported by the Wellcome Trust (WT108749/Z/15/Z) and the European Molecular Biology Laboratory. We thank Ngati Koata, Te Atiawa o Te Waka-a-Maui, and Ngati Manuhiri iwi for granting permission to reuse tuatara samples obtained from Stephens Island (Takapourewa), North Brother Island and Little Barrier Island (Hauturu), respectively; all of the people involved in obtaining and curating the samples held in the Victoria University of Wellington tuatara collection; A. Zimin, D. Puiu, G. Marcais, J. Yorke and R. Crowhurst for help with and discussions about genome assembly; I. Fiddes, J. Armstrong and B. Paten for help with comparative genome alignments and annotation; the National eScience Infrastructure (NeSI) and Swedish National Infrastructure for Computing (SNIC) through the Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX) for computational support; R. McPhee for help with figures; and T. Braisher for manuscript coordination and editing. |
