Purpose: The present study aimed (1) to examine the impact of two high-intensity interval training (HIIT) protocols differing in exercise intensity (low intensity and high intensity) on the dynamic accommodative response (AR), and (2) to elucidate whether the ocular accommodation changes are associated with the function of the autonomic nervous system during stimulus processing, as measured by the heart rate variability (HRV). Methods: Twenty physically active university students (9 women; age = 23.9 +/- 3.3 years) were tested on three separate sessions. The lag of accommodation and the root mean square of successive R-R interval differences (RMSSD) parameter of HRV were obtained at the beginning and at the end of each testing session, while one of the following protocols was applied in a randomized order between the measurements, low-intensity HIIT (8 sprints with 60 s of rest), high-intensity HIIT (8 sprints with 30 s of rest), and Control (walking for 8 min). Results: Our data demonstrated a higher lag of accommodation after the high-intensity HIIT compared to the low-intensity HIIT (p = 0.006, d = 0.798) and control (p = 0.007, d = 0.741), but no significant differences were observed between the low-intensity HIIT protocol and control condition (p = 0.598, d = 0.12). As expected, lower HRV values were observed with higher exercise intensity, but the changes of AR and HRV were not significantly correlated (p > 0.05 in all cases). Conclusions: The present findings indicate that the acute effects of exercise on ocular accommodation depend on exercise intensity, showing that highly demanding physical effort induces a greater lag of accommodation, which may be of relevance when performing near activities after physical efforts.