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| DOI | 10.1016/J.MARGEN.2011.05.002 | ||||
| Año | 2011 | ||||
| Tipo | artículo de investigación |
Citas Totales
Autores Afiliación Chile
Instituciones Chile
% Participación
Internacional
Autores
Afiliación Extranjera
Instituciones
Extranjeras
The marine gastropod Concholepas concholepas, locally known as the "loco", is the main target species of the benthonic Chilean fisheries. Genetic and genomic tools are necessary to study the genome of this species in order to understand the molecular basis of its development, growth, and other key traits to improve the management strategies and to identify local adaptation to prevent loss of biodiversity. Here, we use pyrosequencing technologies to generate the first transcriptomic database from adult specimens of the loco. After trimming, a total of 140,756 Expressed Sequence Tag sequences were achieved. Clustering and assembly analysis identified 19,219 contigs and 105,435 singleton sequences. BlastN analysis showed a significant identity with Expressed Sequence Tags of different gastropod species available in public databases. Similarly, BlastX results showed that only 895 out of the total 124,654 had significant hits and may represent novel genes for marine gastropods. From this database, simple sequence repeat motifs were also identified and a total of 38 primer pairs were designed and tested to assess their potential as informative markers and to investigate their cross-species amplification in different related gastropod species. This dataset represents the first publicly available 454 data for a marine gastropod endemic to the southeastern Pacific coast, providing a valuable transcriptomic resource for future efforts of gene discovery and development of functional markers in other marine gastropods. (C) 2011 Elsevier B.V. All rights reserved.
| Ord. | Autor | Género | Institución - País |
|---|---|---|---|
| 1 | CARDENAS-HINOJOSA, LISSETTE JANINA | Mujer |
Universidad Austral de Chile - Chile
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| 2 | Sanchez, Roland | Hombre |
Universidad Austral de Chile - Chile
|
| 3 | GOMEZ-GARCIA, DANIELA ALEJANDRA | Mujer |
Universidad Austral de Chile - Chile
|
| 4 | Fuenzalida, Gonzalo | Hombre |
Universidad Austral de Chile - Chile
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| 5 | GALLARDO-ESCARATE, CRISTIAN JORGE | Hombre |
Universidad de Concepción - Chile
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| 6 | Tanguy, Arnaud | Hombre |
UNIV PARIS 06 - Francia
CNRS - Francia Sorbonne Université - Francia Adaptation et Diversité en Milieu Marin - Francia |
| Fuente |
|---|
| Fondo Nacional de Desarrollo Científico y Tecnológico |
| Fondo Nacional de Desarrollo CientÃfico y Tecnológico |
| FONDECYT (Fondo Nacional de Desarrollo Cientifico y Tecnologico) |
| Agradecimiento |
|---|
| This work was funded by FONDECYT (Fondo Nacional de Desarrollo Cientifico y Tecnologico) grant # 11080068 to LC. We would like to thank the undergraduate students involved in study as well as the fishermen from the Asociacion de Pescadores Artesanales-Los Molinos (Valdivia-Chile). We also give thanks to Lucia Briones for her laboratory assistance and to Lafayette Eaton for his comments that improve the final version of this manuscript. |
| This work was funded by FONDECYT (Fondo Nacional de Desarrollo Científico y Tecnológico) grant # 11080068 to LC. We would like to thank the undergraduate students involved in study as well as the fishermen from the Asociación de Pescadores Artesanales-Los Molinos (Valdivia-Chile). We also give thanks to Lucia Briones for her laboratory assistance and to Lafayette Eaton for his comments that improve the final version of this manuscript. |